Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Robustness tests and inference helpers #38

Closed
wants to merge 37 commits into from
Closed

Robustness tests and inference helpers #38

wants to merge 37 commits into from

Commits on Sep 16, 2022

  1. Analytic/Gaussian inference helper class

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    40d6d18 View commit details
    Browse the repository at this point in the history

  2. Demote global variables to class attributes 

    This will reduce emcee pooling performance (should look at this later), but restore sanity
    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    4912f54 View commit details
    Browse the repository at this point in the history

  3. Allow unnormalization of the precision matrix

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    74d65e4 View commit details
    Browse the repository at this point in the history

  4. Neural network runner, fixes/renaming

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    b441185 View commit details
    Browse the repository at this point in the history

  5. Allow dataset generation with function calls

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    ba843db View commit details
    Browse the repository at this point in the history

  6. Robustness test helper script, minor fixes

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    6fd26ef View commit details
    Browse the repository at this point in the history

  7. Make scripts executable by default

    @JelleAalbers
    Jelle Aalbers authored and JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    3045f51 View commit details
    Browse the repository at this point in the history

  8. Use safe config py names

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    ee4160d View commit details
    Browse the repository at this point in the history

  9. Remove hdf5 mcmc backend 

    ... so we can run multiple inferences in parallel
    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    dae3278 View commit details
    Browse the repository at this point in the history

  10. Fixes, even safer config name generation

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    990cf59 View commit details
    Browse the repository at this point in the history

  11. Sampler: allow fixed value tuples

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    49c9231 View commit details
    Browse the repository at this point in the history

  12. Use config_val as a reference instead

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    3bed681 View commit details
    Browse the repository at this point in the history

  13. Specify reference config, infer all params

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    bc54cb0 View commit details
    Browse the repository at this point in the history

  14. Rotational averaging in robustness tests

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    1b8ca0b View commit details
    Browse the repository at this point in the history

  15. Workaround for scipy.stats seeding issue

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    2c3599f View commit details
    Browse the repository at this point in the history

  16. Allow artificial scaling of source pixel images

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    02a988c View commit details
    Browse the repository at this point in the history

  17. Allow unnormalize call without mean correction

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    6b63688 View commit details
    Browse the repository at this point in the history

  18. Revert to network_outputs.npz

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    9d5e283 View commit details
    Browse the repository at this point in the history

  19. Use 100 rots by default, not for center_x and center_y 

    To match what is written in the paltas paper
    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    a8849a4 View commit details
    Browse the repository at this point in the history

  20. Allow use of fewer images, small extensions

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    f8de180 View commit details
    Browse the repository at this point in the history

  21. Allow varying no or multiple params, sane dataset names

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    d61eb7c View commit details
    Browse the repository at this point in the history

  22. Common command line interface maker

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    c43a4b7 View commit details
    Browse the repository at this point in the history

  23. Flag arguments, ship norms.csv, cleanup option

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    3133c52 View commit details
    Browse the repository at this point in the history

  24. Add end-to-end test in test suite

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    d65fa1f View commit details
    Browse the repository at this point in the history

  25. Add brightness scaling option

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    7e67c9d View commit details
    Browse the repository at this point in the history

  26. Fix generate tests, add test for CLI maker

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    67ac5e5 View commit details
    Browse the repository at this point in the history

  27. Fix shebang line typo, ignore auto-downloaded model

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    4b657ba View commit details
    Browse the repository at this point in the history

  28. Make k-corrections optional

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    81fb4af View commit details
    Browse the repository at this point in the history

  29. Fix import snafu 

    (Relative imports work differently depending whether you are already in a package or not... I should know this)
    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    4a35df6 View commit details
    Browse the repository at this point in the history

  30. Include csv files in package

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    74e1af2 View commit details
    Browse the repository at this point in the history

  31. Fix posterior plot test 

    Maybe matplotlib has become less tolerant for negative yerr recently? Can't find the PR though.
    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    94bfd3d View commit details
    Browse the repository at this point in the history

  32. Include .fits files (HST PSF) in package 

    Had to move files into a paltas subdir with __init__.py. Including files outside package dir is tricky.
    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    b5f66c7 View commit details
    Browse the repository at this point in the history

  33. Use mini-COSMOS for end-to-end test

    @JelleAalbers
    JelleAalbers committed Sep 16, 2022
    Configuration menu
    Copy the full SHA
    406a066 View commit details
    Browse the repository at this point in the history

Commits on Sep 17, 2022

  1. Get config_dict without ConfigHandler, fix symlink

    @JelleAalbers
    JelleAalbers committed Sep 17, 2022
    Configuration menu
    Copy the full SHA
    e927254 View commit details
    Browse the repository at this point in the history

  2. Forgot numdifftools requirement

    @JelleAalbers
    JelleAalbers committed Sep 17, 2022
    Configuration menu
    Copy the full SHA
    b88b6d8 View commit details
    Browse the repository at this point in the history

  3. numdifftools and emcee are test requirements now

    @JelleAalbers
    JelleAalbers committed Sep 17, 2022
    Configuration menu
    Copy the full SHA
    8f29e4c View commit details
    Browse the repository at this point in the history

Commits on Nov 18, 2022

  1. Add type annotations so generate+autocli works

    @JelleAalbers
    JelleAalbers committed Nov 18, 2022
    Configuration menu
    Copy the full SHA
    9db46e1 View commit details
    Browse the repository at this point in the history