This “package” is the development package. Do not attempt to load it as you would a typical package. It contains a loose testing ground of functionality that, if deemed sufficiently useful, will eventually be migrated into an appropriate package.
You cannot currently install the devel library from the command line,
as it is not a package per se. The simplest way to obtain the
functionality it contains is to load it using the RStudio
devtools::load_all() shortcut.
options(width = 110)
devtools::load_all() # all objects, even non-exported, are accessible
#> ℹ Loading devel
ls("package:devel")
#> [1] "%<>%" "%>%"
#> [3] "abline" "addAssayVariance"
#> [5] "apropos" "as_tibble"
#> [7] "axis" "binom.test"
#> [9] "blue" "boxplot"
#> [11] "calc.aic" "calc.dil.scale.factors"
#> [13] "calc.limits" "calc.mapped.scale.factors"
#> [15] "calc.npl.ci" "calcConnectedComponents"
#> [17] "calcCVbands" "calcCVbyGroup"
#> [19] "calcICC" "calcPairwiseTables"
#> [21] "calcPercentileTable" "calcRsquared"
#> [23] "calcSS2L" "choose_init"
#> [25] "cleanNames" "combn"
#> [27] "compact" "computeCVBands"
#> [29] "computeRefParams" "computeRefParams_kCentral"
#> [31] "computeTestParamsNMetricsBatch" "createConcordTable"
#> [33] "createNormalizationSummaryTable" "createTestsList"
#> [35] "createUrineNormalizationSummaryTable" "curve"
#> [37] "data_dims" "data.catch"
#> [39] "decalibrate" "dehybNormalize"
#> [41] "demedianNormalize" "denormalizationWrapper"
#> [43] "denormalizeAdat" "deplateNormalize"
#> [45] "dilutionNormalize" "dir_ls"
#> [47] "duplicatedIndex" "em_1_step"
#> [49] "enrich_test" "equal.likelihood.pt"
#> [51] "erf" "erf.inv"
#> [53] "erfc" "evaluateCalibrationQC"
#> [55] "exploreNAnalytes" "file.edit"
#> [57] "finder" "fisher.test"
#> [59] "fit.npl" "fit.rlm"
#> [61] "generateSingleSampleReference" "get_pars"
#> [63] "get_tom_data" "get.4PLtheta.file"
#> [65] "get.npl.stats" "getCalSFs"
#> [67] "getDupIdxList" "getInflectionPt"
#> [69] "getInit" "getInput"
#> [71] "getNormNames" "getPlateScale_Scalar"
#> [73] "getRFUdata" "getSSmenu"
#> [75] "gg_color_hue" "gof"
#> [77] "grid" "hist"
#> [79] "ICA" "kCentralMAD"
#> [81] "kCentralSD" "legend"
#> [83] "library.dynam.unload" "lines"
#> [85] "list_modify" "lm"
#> [87] "lsObjects" "lss"
#> [89] "map" "map_dbl"
#> [91] "map_df" "map2"
#> [93] "mclapply" "mergeMetaData"
#> [95] "modifyAptContent" "my_x_log10"
#> [97] "my_y_log10" "my.hyb.plot"
#> [99] "my.qq" "normal_k2_mixture"
#> [101] "obj_size" "optim"
#> [103] "order_somamers" "par"
#> [105] "path_real" "permute"
#> [107] "pf" "plot"
#> [109] "plot.mix_k2" "plot.npl"
#> [111] "plot.scramble.ks" "plotHemo"
#> [113] "plotTwoWayInteraction" "points"
#> [115] "print.npl" "pvalueFDR"
#> [117] "qt" "quantile"
#> [119] "quantileNormalize" "read.csv"
#> [121] "removePlateScale_Scalar" "rlm"
#> [123] "rlm_calibration" "rm_grep"
#> [125] "rnorm" "robustPCA"
#> [127] "robustPCAshrinkage" "robustPCAsvdThresh"
#> [129] "safely" "scrambleClasses"
#> [131] "scrambleKS" "searchBreadthFirst"
#> [133] "seriate" "seriateHeatmap"
#> [135] "set_names" "set_rownames"
#> [137] "sign_test" "sl"
#> [139] "str_glue" "str_remove_all"
#> [141] "str_replace_all" "str_squish"
#> [143] "summary.test_params" "Sys.sourceDir"
#> [145] "system.file" "test.triples.x"
#> [147] "triples_test" "UnormCompSubset"
#> [149] "UnormInGroups" "UnormOneGroup"
#> [151] "var"Please note that this SomaLogic, Inc. internal package is released with a LICENSE. By using in this package you agree to abide by its terms.
Created by Rmarkdown (v2.9) and R version 4.1.0 (2021-05-18).