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21 Open 25 Closed
21 Open 25 Closed
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Issues list

For bam files aligned to transcriptome, I am getting the error 'Unknown sequence name'?
#75 opened Sep 10, 2024 by mohamedbahru
Update version for smartstring crate
#74 opened Sep 7, 2024 by nkkarpov
1
not all region return when using a bed file
#71 opened Feb 14, 2024 by FunGeST
1
bgzipped and indexed reference fasta
#70 opened Feb 5, 2024 by darked89
Index out of bounds
#68 opened Oct 3, 2023 by ChristopherRichie
4
Difference only-depth and base-depth
#67 opened Oct 2, 2023 by Akazhiel
3
weird encoding for reference name
#66 opened Jun 26, 2023 by twaddlac
7
from_pileup_mate_aware very inefficient?
#64 opened May 30, 2023 by brentp
2
parameters for sparse data
#63 opened May 26, 2023 by brentp
1
New Tool for Per-Sequence Depths
#62 opened May 25, 2023 by oschwengers
1
accessing qpos() ?
#60 opened May 23, 2023 by brentp
2
base-depth become extremely slow when calculating highly covered site. bug Something isn't working enhancement New feature or request
#59 opened Nov 16, 2022 by y9c
8
Missing bam/cram file should return an error code bug Something isn't working
#57 opened Sep 29, 2022 by patbohn
2
Add Forward/Reverse mapping counts enhancement New feature or request
#54 opened Jul 8, 2022 by 25shmeckles
2
Support bedGraph output in only-depth enhancement New feature or request
#46 opened Dec 1, 2021 by ghuls
1
Add PGO pass
#39 opened Jul 12, 2021 by sstadick
Create Benchmarking Suite investigation
#31 opened Nov 16, 2020 by sstadick
@sstadick
Clean up error messages enhancement New feature or request
#24 opened Oct 29, 2020 by sstadick
@sstadick
Look into writing my own pileup engine investigation
#11 opened Sep 27, 2020 by sstadick
2
Add an indepth tool that outputs more metrics enhancement New feature or request
#8 opened Sep 27, 2020 by sstadick
Add support of readgroup awareness and filtering enhancement New feature or request
#6 opened Sep 27, 2020 by sstadick
ProTip! no:milestone will show everything without a milestone.