Skip to content

sschattgen/fuzzy_TCR_ref_match

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

12 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

fuzzy TCR database reference match

shiny app for matching single TCRs to reference db with a fuzzy match by hamming or levenshtein distance. It has options for gene usage restrictions.

I wrote it as a little tool for the lab, and for fun, but probably won't update or do much with it. A new database could be supplied and the umap embedding rerun using make_ref_umap.py to customize it.

clone this repo then run code below in R.

library(shiny)
runApp("path_to_folder/fuzzy_TCR_ref_match/")

About

shiny app for fuzyy matching single TCRs to reference db

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published