Remove LINE_MAX

soedinglab · Feb 23, 2020 · d1607bc · d1607bc
1 parent eca2155
commit d1607bc
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Showing 4 changed files with 4 additions and 6 deletions.
diff --git a/src/util/extractframes.cpp b/src/util/extractframes.cpp
@@ -45,9 +45,8 @@ int extractframes(int argc, const char **argv, const Command& command) {
         if (querySize == 0) {
             queryFrom = 0;
         }
-        char buffer[LINE_MAX];
-
 
+        char buffer[1024];
         std::string reverseComplementStr;
         reverseComplementStr.reserve(32000);
         for (unsigned int i = queryFrom; i < (queryFrom + querySize); ++i){

diff --git a/src/util/extractorfs.cpp b/src/util/extractorfs.cpp
@@ -60,6 +60,7 @@ int extractorfs(int argc, const char **argv, const Command& command) {
             queryFrom = 0;
         }
         char* aa = new char[par.maxSeqLen + 3 + 1];
+        char buffer[1024];
 
         std::vector<Orf::SequenceLocation> res;
         res.reserve(1000);
@@ -87,8 +88,6 @@ int extractorfs(int argc, const char **argv, const Command& command) {
                     continue;
                 }
 
-                char buffer[LINE_MAX];
-
                 std::pair<const char*, size_t> sequence = orf.getSequence(loc);
                 size_t fromPos = loc.from;
                 size_t toPos = loc.to;

diff --git a/src/util/orftocontig.cpp b/src/util/orftocontig.cpp
@@ -33,7 +33,7 @@ int orftocontig(int argn, const char **argv, const Command& command) {
 #ifdef OPENMP
         thread_idx = static_cast<unsigned int>(omp_get_thread_num());
 #endif 
-        char orfToContigBuffer[LINE_MAX];
+        char orfToContigBuffer[1024];
 
 #pragma omp for schedule(dynamic, 100)
         for (size_t id = 0; id < orfHeadersReader.getSize(); ++id) {

diff --git a/src/util/splitsequence.cpp b/src/util/splitsequence.cpp
@@ -67,7 +67,7 @@ int splitsequence(int argc, const char **argv, const Command& command) {
         if (querySize == 0) {
             queryFrom = 0;
         }
-        char buffer[LINE_MAX];
+        char buffer[1024];
 
         for (unsigned int i = queryFrom; i < (queryFrom + querySize); ++i){
             progress.updateProgress();