Add --db-load-mode to mergeresultsbyset

soedinglab · Mar 7, 2024 · cb714dd · cb714dd
1 parent abab073
commit cb714dd
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Showing 3 changed files with 7 additions and 1 deletion.
diff --git a/src/MMseqsBase.cpp b/src/MMseqsBase.cpp
@@ -562,7 +562,7 @@ std::vector<Command> baseCommands = {
                                                            {"resultDB", DbType::ACCESS_MODE_INPUT, DbType::NEED_DATA, &DbValidator::resultDb },
                                                            {"pvalDB", DbType::ACCESS_MODE_OUTPUT, DbType::NEED_DATA, &DbValidator::resultDb },
                                                            {"tmpDir", DbType::ACCESS_MODE_OUTPUT, DbType::NEED_DATA, &DbValidator::directory }}},
-        {"mergeresultsbyset",    mergeresultsbyset,    &par.threadsandcompression,COMMAND_MULTIHIT,
+        {"mergeresultsbyset",    mergeresultsbyset,    &par.mergeresultsbyset,    COMMAND_MULTIHIT,
                 "Merge results from multiple ORFs back to their respective contig",
                 NULL,
                 "Ruoshi Zhang, Clovis Norroy & Milot Mirdita <[email protected]>",

diff --git a/src/commons/Parameters.cpp b/src/commons/Parameters.cpp
@@ -892,6 +892,11 @@ Parameters::Parameters():
     combinepvalbyset.push_back(&PARAM_COMPRESSED);
     combinepvalbyset.push_back(&PARAM_V);
 
+    // mergeresultsbyset
+    mergeresultsbyset.push_back(&PARAM_PRELOAD_MODE);
+    mergeresultsbyset.push_back(&PARAM_THREADS);
+    mergeresultsbyset.push_back(&PARAM_COMPRESSED);
+    mergeresultsbyset.push_back(&PARAM_V);
 
     // offsetalignment
     offsetalignment.push_back(&PARAM_CHAIN_ALIGNMENT);

diff --git a/src/commons/Parameters.h b/src/commons/Parameters.h
@@ -1166,6 +1166,7 @@ class Parameters {
     std::vector<MMseqsParameter*> profile2seq;
     std::vector<MMseqsParameter*> besthitbyset;
     std::vector<MMseqsParameter*> combinepvalbyset;
+    std::vector<MMseqsParameter*> mergeresultsbyset;
     std::vector<MMseqsParameter*> multihitdb;
     std::vector<MMseqsParameter*> multihitsearch;
     std::vector<MMseqsParameter*> expandaln;