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perf: autobump bio/bustools/count #2339

Merged

mergify merged 2 commits into master from autobump/bio-bustools-count

Nov 17, 2023

Contributor

snakedeploy-bot bot commented Nov 17, 2023

Automatic bump of bio/bustools/count.

snakedeploy-bot bot added 2 commits

November 17, 2023 01:35


          perf: update bio/bustools/count/environment.yaml.

7cab7ad


          perf: update env pinning.

af544ea

snakedeploy-bot bot added the bio/bustools/count label

mergify bot approved these changes

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Automatically approving successfull autobump

mergify bot merged commit f8598f8 into master

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mergify bot deleted the autobump/bio-bustools-count branch

November 17, 2023 01:38

johanneskoester pushed a commit that referenced this pull request


          chore: release 3.0.0 (#2322)

77f711e

🤖 I have created a release \*beep\* \*boop\*
---
##
[3.0.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v2.13.0...v3.0.0)
(2023-11-23)


### ⚠ BREAKING CHANGES

* replace all bbtool wrappers with one bbtool wrapper for all
subcommands (#1322)

### Features

* allow for specifying multiple chromosomes in ensembl reference dna
sequence download wrapper
([#2376](https://www.github.com/snakemake/snakemake-wrappers/issues/2376))
([c5590f0](https://www.github.com/snakemake/snakemake-wrappers/commit/c5590f03c9990b851181171e70217bb911ddac27))
* replace all bbtool wrappers with one bbtool wrapper for all
subcommands
([#1322](https://www.github.com/snakemake/snakemake-wrappers/issues/1322))
([6eb3c22](https://www.github.com/snakemake/snakemake-wrappers/commit/6eb3c227686c545b937d7cc5ef39b0b435f3e2b0))


### Bug Fixes

* Update MultiQC to 1.18
([#2377](https://www.github.com/snakemake/snakemake-wrappers/issues/2377))
([03bf2d9](https://www.github.com/snakemake/snakemake-wrappers/commit/03bf2d9e2d13968cb71a5e67d80a57b1502dc060))


### Performance Improvements

* autobump bio/bbtools
([#2325](https://www.github.com/snakemake/snakemake-wrappers/issues/2325))
([bf09e80](https://www.github.com/snakemake/snakemake-wrappers/commit/bf09e801dba4e3cf2186ec80631e22df6adbf993))
* autobump bio/bedtools/bamtobed
([#2334](https://www.github.com/snakemake/snakemake-wrappers/issues/2334))
([91b8054](https://www.github.com/snakemake/snakemake-wrappers/commit/91b8054fa408e2a96fed5ab24eea3f4f9f9a7f5c))
* autobump bio/bedtools/complement
([#2341](https://www.github.com/snakemake/snakemake-wrappers/issues/2341))
([d0b9659](https://www.github.com/snakemake/snakemake-wrappers/commit/d0b96598864e0f5827eafb6a3f47aab8c2524995))
* autobump bio/bedtools/coveragebed
([#2342](https://www.github.com/snakemake/snakemake-wrappers/issues/2342))
([8c25388](https://www.github.com/snakemake/snakemake-wrappers/commit/8c25388d851eaaae786f2ecdb3a684cf66037c1b))
* autobump bio/bedtools/genomecov
([#2336](https://www.github.com/snakemake/snakemake-wrappers/issues/2336))
([2ba070e](https://www.github.com/snakemake/snakemake-wrappers/commit/2ba070edd0781b97227a2103bcd28670d0382141))
* autobump bio/bedtools/intersect
([#2338](https://www.github.com/snakemake/snakemake-wrappers/issues/2338))
([b299438](https://www.github.com/snakemake/snakemake-wrappers/commit/b2994382ff94d11491ea991635fd25f74e9a56a4))
* autobump bio/bedtools/merge
([#2330](https://www.github.com/snakemake/snakemake-wrappers/issues/2330))
([8c6ae83](https://www.github.com/snakemake/snakemake-wrappers/commit/8c6ae83bdd70b09dd3e434d13cc8b035ebe34089))
* autobump bio/bedtools/slop
([#2324](https://www.github.com/snakemake/snakemake-wrappers/issues/2324))
([dfef51e](https://www.github.com/snakemake/snakemake-wrappers/commit/dfef51e5d5358a1fdfc87e7c560b31aab6e3a1aa))
* autobump bio/bedtools/sort
([#2328](https://www.github.com/snakemake/snakemake-wrappers/issues/2328))
([fde082e](https://www.github.com/snakemake/snakemake-wrappers/commit/fde082e8c75bf674324499b52bd48340c0572f64))
* autobump bio/bedtools/split
([#2326](https://www.github.com/snakemake/snakemake-wrappers/issues/2326))
([7663786](https://www.github.com/snakemake/snakemake-wrappers/commit/7663786a39a45ad0e6090324f400e94bb3e0bc68))
* autobump bio/blast/blastn
([#2335](https://www.github.com/snakemake/snakemake-wrappers/issues/2335))
([518a30a](https://www.github.com/snakemake/snakemake-wrappers/commit/518a30ad707534046a2a1cfe861e861ece749683))
* autobump bio/blast/makeblastdb
([#2329](https://www.github.com/snakemake/snakemake-wrappers/issues/2329))
([f24d810](https://www.github.com/snakemake/snakemake-wrappers/commit/f24d8106f4c2b6d1230535486967e82ae3f95dd5))
* autobump bio/bustools/count
([#2339](https://www.github.com/snakemake/snakemake-wrappers/issues/2339))
([f8598f8](https://www.github.com/snakemake/snakemake-wrappers/commit/f8598f83cf8e4f7b5bd75f18bc036b4f9610de07))
* autobump bio/bwa-mem2/mem
([#2323](https://www.github.com/snakemake/snakemake-wrappers/issues/2323))
([c751efd](https://www.github.com/snakemake/snakemake-wrappers/commit/c751efda5b93b155c1b42726dbe0f7fd4e10873c))
* autobump bio/bwa-meme/mem
([#2331](https://www.github.com/snakemake/snakemake-wrappers/issues/2331))
([ae28cb4](https://www.github.com/snakemake/snakemake-wrappers/commit/ae28cb4db8473e147f033f447f186fead3a3f092))
* autobump bio/bwa-memx/mem
([#2337](https://www.github.com/snakemake/snakemake-wrappers/issues/2337))
([1fe5ba7](https://www.github.com/snakemake/snakemake-wrappers/commit/1fe5ba7190b2f690a683a4c7f3397f039b8d71a2))
* autobump bio/bwa/mem
([#2333](https://www.github.com/snakemake/snakemake-wrappers/issues/2333))
([e24ce7c](https://www.github.com/snakemake/snakemake-wrappers/commit/e24ce7c1affe9f779dd3bff9c72bfb46608fdbb9))
* autobump bio/bwa/sampe
([#2327](https://www.github.com/snakemake/snakemake-wrappers/issues/2327))
([70a1ac3](https://www.github.com/snakemake/snakemake-wrappers/commit/70a1ac3efaeff35b3059e28d109ac8112b374669))
* autobump bio/bwa/samse
([#2332](https://www.github.com/snakemake/snakemake-wrappers/issues/2332))
([61c0e6d](https://www.github.com/snakemake/snakemake-wrappers/commit/61c0e6d4fd93e13f956ef40720ab072519060d90))
* autobump bio/bwa/samxe
([#2340](https://www.github.com/snakemake/snakemake-wrappers/issues/2340))
([d0865bc](https://www.github.com/snakemake/snakemake-wrappers/commit/d0865bc5a2f1e0a3358be2a678fd1545d95a75d8))
* autobump bio/cooltools/dots
([#2344](https://www.github.com/snakemake/snakemake-wrappers/issues/2344))
([c55e268](https://www.github.com/snakemake/snakemake-wrappers/commit/c55e26814506ea5d6d33afd2689dfe005f2cf968))
* autobump bio/cooltools/eigs_cis
([#2348](https://www.github.com/snakemake/snakemake-wrappers/issues/2348))
([1b7d26e](https://www.github.com/snakemake/snakemake-wrappers/commit/1b7d26e2775cdd6c785cf34a886e15bd82289aca))
* autobump bio/cooltools/eigs_trans
([#2346](https://www.github.com/snakemake/snakemake-wrappers/issues/2346))
([f00f77b](https://www.github.com/snakemake/snakemake-wrappers/commit/f00f77b0a0d057f5576f1a375bc96b79a9e9f0c9))
* autobump bio/cooltools/expected_cis
([#2347](https://www.github.com/snakemake/snakemake-wrappers/issues/2347))
([f4c8924](https://www.github.com/snakemake/snakemake-wrappers/commit/f4c8924b6b4f544a989e665d5e272d0f917ef700))
* autobump bio/cooltools/expected_trans
([#2350](https://www.github.com/snakemake/snakemake-wrappers/issues/2350))
([7e3f763](https://www.github.com/snakemake/snakemake-wrappers/commit/7e3f7635a0a7e4832dbf4d45fcabb9497efb0e89))
* autobump bio/cooltools/insulation
([#2343](https://www.github.com/snakemake/snakemake-wrappers/issues/2343))
([77e4ef5](https://www.github.com/snakemake/snakemake-wrappers/commit/77e4ef5d5a149bded23ebb28be3430e3c013eb76))
* autobump bio/cooltools/pileup
([#2345](https://www.github.com/snakemake/snakemake-wrappers/issues/2345))
([6c6b0b1](https://www.github.com/snakemake/snakemake-wrappers/commit/6c6b0b1c6712d37909927f444debf13becb7841b))
* autobump bio/cooltools/saddle
([#2349](https://www.github.com/snakemake/snakemake-wrappers/issues/2349))
([9f0f802](https://www.github.com/snakemake/snakemake-wrappers/commit/9f0f802f339667707bd8ed6013ca6e759ca9ce05))
* autobump bio/gseapy/gsea
([#2351](https://www.github.com/snakemake/snakemake-wrappers/issues/2351))
([b3b3c94](https://www.github.com/snakemake/snakemake-wrappers/commit/b3b3c94d857cfcdfafdc9ef819ba8f2567f26afa))
* autobump bio/hmmer/hmmbuild
([#2355](https://www.github.com/snakemake/snakemake-wrappers/issues/2355))
([2744f59](https://www.github.com/snakemake/snakemake-wrappers/commit/2744f59f5a9c13d5e80152f737d315535f4049ff))
* autobump bio/hmmer/hmmpress
([#2354](https://www.github.com/snakemake/snakemake-wrappers/issues/2354))
([3f379bc](https://www.github.com/snakemake/snakemake-wrappers/commit/3f379bce4f20970983b319cd327bf5a31623ba8d))
* autobump bio/hmmer/hmmscan
([#2353](https://www.github.com/snakemake/snakemake-wrappers/issues/2353))
([50c6425](https://www.github.com/snakemake/snakemake-wrappers/commit/50c642568ae259784c0fb50cf3440e3b84e0e6b5))
* autobump bio/hmmer/hmmsearch
([#2352](https://www.github.com/snakemake/snakemake-wrappers/issues/2352))
([ed2bbcc](https://www.github.com/snakemake/snakemake-wrappers/commit/ed2bbccff232d5a16677ea60e6e70e241ed4bb61))
* autobump bio/last/lastal
([#2357](https://www.github.com/snakemake/snakemake-wrappers/issues/2357))
([2589f18](https://www.github.com/snakemake/snakemake-wrappers/commit/2589f18971c2b377e0c8003c7f2ef7d412a277ae))
* autobump bio/last/lastdb
([#2356](https://www.github.com/snakemake/snakemake-wrappers/issues/2356))
([4cee71f](https://www.github.com/snakemake/snakemake-wrappers/commit/4cee71f08cf1cf55c31ddb654f1349830412e708))
* autobump bio/picard/addorreplacereadgroups
([#2370](https://www.github.com/snakemake/snakemake-wrappers/issues/2370))
([cf1cef0](https://www.github.com/snakemake/snakemake-wrappers/commit/cf1cef071e5b932c797078661bacf1eaf8ab12b2))
* autobump bio/picard/bedtointervallist
([#2360](https://www.github.com/snakemake/snakemake-wrappers/issues/2360))
([b71d414](https://www.github.com/snakemake/snakemake-wrappers/commit/b71d414de9d5adea175fd773caead4c4e72a2dde))
* autobump bio/picard/collectalignmentsummarymetrics
([#2359](https://www.github.com/snakemake/snakemake-wrappers/issues/2359))
([8873d75](https://www.github.com/snakemake/snakemake-wrappers/commit/8873d7552e8ef4acd58aa3d380e847768342aa59))
* autobump bio/picard/collectgcbiasmetrics
([#2366](https://www.github.com/snakemake/snakemake-wrappers/issues/2366))
([f6d5248](https://www.github.com/snakemake/snakemake-wrappers/commit/f6d52486f7a511d705a383325ba07edd8821f99a))
* autobump bio/picard/collecthsmetrics
([#2369](https://www.github.com/snakemake/snakemake-wrappers/issues/2369))
([f730d54](https://www.github.com/snakemake/snakemake-wrappers/commit/f730d54f21a56723237c33645f103645c9ea977e))
* autobump bio/picard/collectinsertsizemetrics
([#2373](https://www.github.com/snakemake/snakemake-wrappers/issues/2373))
([a952ad4](https://www.github.com/snakemake/snakemake-wrappers/commit/a952ad4503ea74ecef60e0646c0fcbdc8aa8158f))
* autobump bio/picard/collectmultiplemetrics
([#2364](https://www.github.com/snakemake/snakemake-wrappers/issues/2364))
([b21473a](https://www.github.com/snakemake/snakemake-wrappers/commit/b21473aff3482061b1e41b2b508f64e8072a77d7))
* autobump bio/picard/collectrnaseqmetrics
([#2361](https://www.github.com/snakemake/snakemake-wrappers/issues/2361))
([2b36e3c](https://www.github.com/snakemake/snakemake-wrappers/commit/2b36e3c0dd38b1abd75e6a531c12913b4365b1b0))
* autobump bio/picard/collecttargetedpcrmetrics
([#2358](https://www.github.com/snakemake/snakemake-wrappers/issues/2358))
([babe13e](https://www.github.com/snakemake/snakemake-wrappers/commit/babe13e9120377c7e6c3ea7f96c10fdb4e616571))
* autobump bio/picard/createsequencedictionary
([#2372](https://www.github.com/snakemake/snakemake-wrappers/issues/2372))
([70630ac](https://www.github.com/snakemake/snakemake-wrappers/commit/70630ace2fba1b8a7e07e8dadeadb210dba5fbe6))
* autobump bio/picard/markduplicates
([#2365](https://www.github.com/snakemake/snakemake-wrappers/issues/2365))
([66bea69](https://www.github.com/snakemake/snakemake-wrappers/commit/66bea6963e0cfe26908cd093acf011504869c4a3))
* autobump bio/picard/mergesamfiles
([#2362](https://www.github.com/snakemake/snakemake-wrappers/issues/2362))
([b1e64e2](https://www.github.com/snakemake/snakemake-wrappers/commit/b1e64e2158f13381bd3c052e9641a1f6c65e9602))
* autobump bio/picard/mergevcfs
([#2363](https://www.github.com/snakemake/snakemake-wrappers/issues/2363))
([2ca8f9e](https://www.github.com/snakemake/snakemake-wrappers/commit/2ca8f9eaa2255a7a9393e54ea88bae1c2d60ea06))
* autobump bio/picard/revertsam
([#2367](https://www.github.com/snakemake/snakemake-wrappers/issues/2367))
([8a54527](https://www.github.com/snakemake/snakemake-wrappers/commit/8a54527a7b493d434c3d94e3376fab18673691b7))
* autobump bio/picard/samtofastq
([#2371](https://www.github.com/snakemake/snakemake-wrappers/issues/2371))
([62ae9e5](https://www.github.com/snakemake/snakemake-wrappers/commit/62ae9e50d617a4529b767fce6d9f9b070d0dda45))
* autobump bio/picard/sortsam
([#2368](https://www.github.com/snakemake/snakemake-wrappers/issues/2368))
([1a359a4](https://www.github.com/snakemake/snakemake-wrappers/commit/1a359a4bc88d38880bbf552698f95c6f1d605021))
* autobump bio/sortmerna
([#2374](https://www.github.com/snakemake/snakemake-wrappers/issues/2374))
([e0920c9](https://www.github.com/snakemake/snakemake-wrappers/commit/e0920c9440f494167354f20583618d603b2c173e))
* autobump bio/vsearch
([#2375](https://www.github.com/snakemake/snakemake-wrappers/issues/2375))
([c59fbc8](https://www.github.com/snakemake/snakemake-wrappers/commit/c59fbc8f52e16204ffb3b7c8b1c17479c4ebe391))
---


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Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

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bio/bustools/count