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MsPathFinderT result reading #775

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merged 16 commits into from
Jul 19, 2024

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nbollis
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@nbollis nbollis commented Apr 15, 2024

Added support for MsPathFinderT result parsing.
Added the three types of result files from MsPathFinderT in one ResultFile Class.
This PR includes changes from adding in fragger results and will be reduced once those get merged in.

Added Json ignore to ChemicalFormula.ThisChemicalFormula due to it being a self-referential loop.
Adjusted the scope of all custom CsvHelper converters to be internal as they are not needed outside of the Readers project

trishorts
trishorts previously approved these changes Apr 17, 2024
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would you please add a more verbose comment to the PR that articulates all the changes

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codecov bot commented Apr 23, 2024

Codecov Report

Attention: Patch coverage is 97.39130% with 3 lines in your changes missing coverage. Please review.

Project coverage is 75.38%. Comparing base (182115c) to head (8a6e7d3).

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@@            Coverage Diff             @@
##           master     #775      +/-   ##
==========================================
+ Coverage   75.30%   75.38%   +0.08%     
==========================================
  Files         197      199       +2     
  Lines       30541    30655     +114     
  Branches     3063     3079      +16     
==========================================
+ Hits        22999    23110     +111     
  Misses       7026     7026              
- Partials      516      519       +3     
Files Coverage Δ
mzLib/Chemistry/ChemicalFormula.cs 95.38% <100.00%> (ø)
...lts/IndividualResultRecords/MsPathFinderTResult.cs 100.00% <100.00%> (ø)
mzLib/Readers/Util/SupportedFileTypes.cs 97.40% <100.00%> (+0.34%) ⬆️
mzLib/Readers/Util/Converters.cs 94.66% <97.61%> (+3.75%) ⬆️
...rnalResults/ResultFiles/MsPathFinderTResultFile.cs 93.10% <93.10%> (ø)

trishorts
trishorts previously approved these changes Apr 24, 2024
avcarr2
avcarr2 previously approved these changes Jun 13, 2024
@nbollis nbollis merged commit 7ec999f into smith-chem-wisc:master Jul 19, 2024
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6 participants