Skip to content

Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules

Notifications You must be signed in to change notification settings

sjackman/tigmint-data

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Correct misassemblies using Tigmint (GIAB HG004)

Molecule summary report

Assembly
abyss2
abyss2_bionano_arcs
supernova

Data

Chromium reads

/projects/btl/datasets/hsapiens/giab/HG004/10XGenomics/NA24143-chromium_fastqs-PostLongranger/NA24143-chromium_longranger/outs/barcoded.fastq.gz

ABySS 2.0 (abyss-2.0/scaffolds.fa)

/projects/btl/bloom-dbg/assembler-comparison/bloom-dbg/hsapiens/HG004/bfc/d2b18d3/26G/N7/c3/k144/hsapiens-8.fa

ABySS 2.0 + Bionano + ARCS assembly (abyss-2.0/bionano+arcs-scaffolds.fa)

/projects/btl/syeo/ARCS/hsapiens/abyss/chromium/NA24143/ARCS-runs/bc079e1/human-bionano/26GbFilter/30kbEnds/c5a-links_1.8.2/human_c5a_l5_a0.3_filtered.scaffolds.fa

I believe ARCS was used to scaffold this assembly:

/projects/btl/bloom-dbg/assembler-comparison/bloom-dbg/hsapiens/HG004/bfc/d2b18d3/26G/N7/c3/k144/bionano/aggressive-B2-N2/hsapiens-scaffolds.fa.lrz