Use files from pfish/python-3.12 branch

python-spec/requirements-py3.10.txt

@@ -1,37 +1,19 @@
-anndata==0.9.1
-attrs==23.1.0
-cloudpickle==2.2.1
-contourpy==1.1.0
-cycler==0.11.0
-fonttools==4.40.0
-h5py==3.9.0
-joblib==1.2.0
-kiwisolver==1.4.4
-llvmlite==0.39.1
-matplotlib==3.7.1
+anndata==0.10.5.post1
+array_api_compat==1.4.1
+attrs==23.2.0
+exceptiongroup==1.2.0
+h5py==3.10.0
+llvmlite==0.42.0
 natsort==8.4.0
-networkx==3.1
-numba==0.56.4
-numpy==1.23.5
-packaging==23.1
-pandas==1.5.3
-patsy==0.5.3
-Pillow==9.5.0
-pyarrow==12.0.1
+numba==0.59.0
+numpy==1.26.4
+packaging==23.2
+pandas==2.2.0
+pyarrow==15.0.0
 pyarrow-hotfix==0.6
-pynndescent==0.5.10
 python-dateutil==2.8.2
 pytz==2024.1
-scanpy==1.9.3
-scikit-learn==1.2.2
-scipy==1.10.1
-seaborn==0.12.2
-session-info==1.0.0
+scipy==1.12.0
 six==1.16.0
-statsmodels==0.14.0
-stdlib-list==0.9.0
-tblib==1.7.0
-threadpoolctl==3.1.0
-tqdm==4.65.0
-typing_extensions==4.6.3
-umap-learn==0.5.3
+typing_extensions==4.9.0
+tzdata==2024.1

python-spec/requirements-py3.9.txt

@@ -1,8 +1,10 @@
 anndata==0.10.5.post1
 array_api_compat==1.4.1
 attrs==23.2.0
+docutils==0.16
 exceptiongroup==1.2.0
 h5py==3.10.0
+jmespath==1.0.1
 llvmlite==0.42.0
 natsort==8.4.0
 numba==0.59.0
@@ -13,6 +15,8 @@ pyarrow==15.0.0
 pyarrow-hotfix==0.6
 python-dateutil==2.8.2
 pytz==2024.1
+rsa==4.7.2
+s3transfer==0.6.0
 scipy==1.12.0
 six==1.16.0
 typing_extensions==4.9.0