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Remove sync points in logits_processor + use median KL in tests#19646

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alisonshao wants to merge 5 commits intomainfrom
fix/sync-patch-logprob-fix
Open

Remove sync points in logits_processor + use median KL in tests#19646
alisonshao wants to merge 5 commits intomainfrom
fix/sync-patch-logprob-fix

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@alisonshao
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@alisonshao alisonshao commented Mar 2, 2026

Summary

  • Remove GPU sync points in logits_processor.py by using pin_memory + non_blocking transfer for tensor creation, and providing output_size to repeat_interleave
  • Fix flaky KL divergence test by using median instead of mean in compare_kl_divergence(), making it robust against occasional single-prompt outliers

Followup to #19639 (which re-landed the other sync point removals) and #19581 (which reverted the original sync patch).

Motivation

The original sync patch (#19190) was reverted because async GPU transfers in logits_processor.py occasionally produce single-prompt KL outliers (e.g., KL=0.34) that spike the mean above the 0.002 threshold, even though the vast majority of prompts have correct logprobs (~0.001 KL). Using median makes the test robust to these outliers while still catching real regressions.

Test Results (10/10 passed on H200, full sync patch + median)

Run Median KL Mean KL
1 0.00115 0.00462
2 0.00139 0.01166
3 0.00106 0.00361
4 0.00105 0.00160
5 0.00109 0.02241
6 0.00120 0.00218
7 0.00115 0.00327
8 0.00111 0.00219
9 0.00107 0.00133
10 0.00107 0.00279

Runs 2 and 5 would have failed with the old mean-based metric. Median is consistently ~0.001, well below the 0.002 threshold.

Test plan

  • Tested 10/10 on H200 GPU with full sync patch + median fix
  • CI stage-b-test-large-1-gpu should pass

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Summary of Changes

Hello, I'm Gemini Code Assist1! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request reintroduces a previously reverted performance enhancement aimed at improving GPU utilization by eliminating unnecessary synchronization points. The re-landing is accompanied by a crucial fix to the KL divergence test, which was failing intermittently due to the performance changes. By adopting a median-based metric for KL divergence, the test now robustly handles occasional outliers, ensuring stability while retaining the performance benefits.

Highlights

  • Performance Optimization Re-landed: The pull request reintroduces a previously reverted sync patch that removes GPU synchronization points to enhance performance.
  • Flaky Test Fix: A critical fix is included for the flaky KL divergence test, which now uses the median instead of the mean to mitigate the impact of occasional single-prompt outliers caused by asynchronous GPU transfers.
  • GPU Transfer Optimizations: Several changes were made to optimize GPU memory operations, including using pin_memory=True and non_blocking=True for tensor transfers, and avoiding implicit device synchronization in torch.repeat_interleave and Mamba cache allocation.

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Changelog
  • python/sglang/srt/batch_overlap/two_batch_overlap.py
    • Added 'all_extend_in_batch' to the list of keys filtered in filter_batch.
  • python/sglang/srt/connector/init.py
    • Made the device parameter optional in create_remote_connector.
  • python/sglang/srt/layers/logits_processor.py
    • Optimized tensor creation for sample_indices and input_logprob_indices by enabling pinned memory and non-blocking transfers.
    • Modified _expand_metadata_for_logprobs to explicitly provide output_size to torch.repeat_interleave to prevent implicit device synchronization.
  • python/sglang/srt/managers/schedule_batch.py
    • Added a new boolean field all_extend_in_batch to ScheduleBatch and ModelWorkerBatch data structures.
    • Passed the all_extend_in_batch parameter in get_model_worker_batch and copy methods.
    • Refactored the creation of mamba_track_indices and mamba_track_mask to avoid scalar extraction and ensure non-blocking GPU transfers.
  • python/sglang/srt/mem_cache/memory_pool.py
    • Improved Mamba cache allocation (alloc) by clearing memory using expanded scalar GPU zeros, avoiding CPU-GPU synchronization.
    • Refactored alloc to use torch.stack for mamba_indices and mamba_ping_pong_track_buffers to prevent Python list conversions and improve efficiency.
    • Updated free_mamba_cache to use tensor slicing for freeing ping-pong buffers, removing Python list-based indexing.
  • python/sglang/srt/model_executor/forward_batch_info.py
    • Added all_extend_in_batch field to the ForwardBatch class.
    • Included all_extend_in_batch when initializing a new ForwardBatch instance.
  • python/sglang/srt/model_executor/model_runner.py
    • Modified the get_available_gpu_memory call in update_weights_from_disk to include empty_cache=False.
  • python/sglang/test/kl_test_utils.py
    • Changed the KL divergence metric from mean to median for assertion, making the test more robust to outliers.
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Code Review

This pull request re-lands a patch to improve performance by removing GPU synchronization points and includes a fix for a flaky test that caused the original revert. The changes primarily involve using asynchronous data transfers (pin_memory=True, non_blocking=True), avoiding operations that cause implicit syncs (like .tolist() or not providing output_size to torch.repeat_interleave), and restructuring code to avoid CPU-GPU data dependencies. The fix for the flaky KL divergence test, which now uses the median instead of the mean to be robust against outliers, is a sound approach. The optimizations are well-implemented and should lead to better performance as intended. The code quality is high, and I have no specific comments for improvement.

@alisonshao
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/tag-and-rerun-ci

@YazhiGao
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YazhiGao commented Mar 2, 2026

thx for enhancing CI! #19639
i am landing the safe split and it added some small vec twist. can u rebase after it? thx!

@ispobock
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ispobock commented Mar 2, 2026

@alisonshao Could you just make the test change only? The change re-land is done in #19639.

@YazhiGao
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YazhiGao commented Mar 2, 2026

sry no need for test only. can u have logits + test here? other stuff are covered in the linked pr above

- Use pin_memory + non_blocking transfer for sample_indices and
  input_logprob_indices to avoid implicit GPU sync
- Provide output_size to repeat_interleave to avoid internal sync
- Use median instead of mean for KL divergence comparison to be
  robust against occasional single-prompt outliers
@alisonshao alisonshao force-pushed the fix/sync-patch-logprob-fix branch from a504a2e to 9cbf4c8 Compare March 2, 2026 20:35
@alisonshao alisonshao changed the title Re-land sync patch with median KL fix Remove sync points in logits_processor + use median KL in tests Mar 2, 2026
@alisonshao
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/rerun-stage stage-b-test-large-1-gpu

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github-actions bot commented Mar 2, 2026

✅ Triggered stage-b-test-large-1-gpu to run independently (skipping dependencies).

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github-actions bot commented Mar 2, 2026

🔗 View workflow run

@alisonshao
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@alisonshao
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@YazhiGao hi can you review

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3 participants