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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 404 45

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 248 36

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 145 25

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 144 48

  5. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

  6. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 89 27

Repositories

Showing 10 of 180 repositories
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    seung-lab/cloud-files’s past year of commit activity
    Python 39 BSD-3-Clause 8 14 1 Updated Feb 20, 2025
  • connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    seung-lab/connected-components-3d’s past year of commit activity
    C++ 404 LGPL-3.0 45 11 4 Updated Feb 20, 2025
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

    seung-lab/crackle’s past year of commit activity
    C++ 8 BSD-3-Clause 1 11 0 Updated Feb 20, 2025
  • ng-extend Public
    seung-lab/ng-extend’s past year of commit activity
    TypeScript 5 7 3 26 Updated Feb 19, 2025
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 46 GPL-3.0 18 23 5 Updated Feb 19, 2025
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 23 Apache-2.0 322 91 37 Updated Feb 18, 2025
  • draco Public Forked from google/draco

    Draco is a library for compressing and decompressing 3D geometric meshes and point clouds. It is intended to improve the storage and transmission of 3D graphics.

    seung-lab/draco’s past year of commit activity
    C++ 0 Apache-2.0 1,007 0 0 Updated Feb 18, 2025
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 144 BSD-3-Clause 48 82 5 Updated Feb 17, 2025
  • messaging-client Public
    seung-lab/messaging-client’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Feb 12, 2025
  • fastmorph Public

    Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.

    seung-lab/fastmorph’s past year of commit activity
    C++ 13 GPL-3.0 3 3 0 Updated Feb 12, 2025
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