CI and linting fixes

Signed-off-by: Rob Syme <[email protected]>

.github/workflows/ci.yml

@@ -21,10 +21,12 @@ jobs:
     # Only run on push if this is the nf-aggregate dev branch (merged PRs)
     if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'seqeralabs/nf-aggregate') }}"
     runs-on: ubuntu-latest
+    env:
+      TOWER_ACCESS_TOKEN: ${{ secrets.TOWER_ACCESS_TOKEN }}
     strategy:
       matrix:
         NXF_VER:
-          - "23.04.0"
+          - "23.10.0"
           - "latest-everything"
     steps:
       - name: Check out pipeline code

.prettierignore

@@ -10,3 +10,4 @@ testing/
 testing*
 *.pyc
 bin/
+*.html

assets/schema_input.json

@@ -16,8 +16,8 @@
                 "type": "string",
                 "pattern": "^[a-z]+/[a-z]+$",
                 "errorMessage": "Please provide a valid Seqera Platform Workspace name"
-            },
+            }
         },
         "required": ["id", "workspace"]
     }
-}
+}

bin/plot_run_gantt.py

@@ -72,7 +72,8 @@ def build_gantt(title: str, input_dir: str, output_file: str):
             + timedelta(seconds=1),
             "instance": f"{d.get('instanceId', 'HEAD')} ({d.get('machineType', 'unknown')})",
         }
-        for d in data if d.get("complete")
+        for d in data
+        if d.get("complete")
     )
 
     fig = px.timeline(

modules/local/seqera_runs_dump/main.nf

@@ -6,7 +6,7 @@ Long getWorkspaceId(orgName, workspaceName, client, authHeader) {
     if (orgResponse.statusCode == 200) {
         def orgMap = orgResponse.json?.organizations.collectEntries { org -> [org.name, org.orgId]}
         def orgId = orgMap.get(orgName)
-        if(!orgId) log.warn "Could not find organization '${orgName}'" 
+        if(!orgId) log.warn "Could not find organization '${orgName}'"
 
         // GET the workspaces in this org
         def workspaceReponse = client.get(path: "/orgs/${orgId}/workspaces", headers: authHeader)