Code

Ingest sequencing accession IDs#387

Code

Merged

davereinhart merged 7 commits intomasterseattleflu/id3c-customizations:masterfrom ingest-seq-accession-idsseattleflu/id3c-customizations:ingest-seq-accession-idsCopy head branch name to clipboardOct 7, 2024

+225-5

Commits

Commits on Aug 5, 2024

• Add function to parse sequencing accession ID files for ingestion

  Show description for f12863d
  davereinhart

  committed
  f12863d

Commits on Aug 6, 2024

• Update clinical sequecning accession file parsing function to handle RSV tracking sheet format.

  davereinhart

  committed
  521db2b

• Add sequence identifier when parsing sequencing accessioning file

  Show description for daff921
  davereinhart

  committed
  daff921

• Update clinical ETL to process sequencing accessioning records from receiving table

  Show description for 1688cb5
  davereinhart

  committed
  1688cb5

Commits on Sep 10, 2024

• Add processing for flu A and B records in clincial parse-sequencing command.

  davereinhart

  committed
  6fa2d1d

Commits on Sep 16, 2024

• Update clinical ETL to handle simplified sequencing data

  Show description for 5929a34
  davereinhart

  committed
  5929a34

• Enable upsert of consensus_genome records with ON CONFLICT clause

  Show description for e306ec1
  davereinhart

  committed
  e306ec1