KP2023 data dict update and ingest ICD10 codes #383
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FHIR ETL requires encounter reference to be present in order to process condition entries
bencap
reviewed
Apr 19, 2024
Co-authored-by: Benjamin Capodanno <[email protected]>
In summer 2022, all clinical parse functions were updated to convert encountered date timestamps from UTC to local time (see 3205e0b) Now, in 2024, we are reingesting kp encounter metadata from 2018-2021. These encounters were processed and uploaded to id3c with UTC encounter dates. Since the encounter identifier depends on the encounter date, and since encounter identifiers should be the same each time a sample is uploaded to id3c, the encounter date should be in UTC for these kp samples.
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bencap
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Apr 22, 2024
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Update clinical parse-kp2023 to reflect data dictionary updates for symptom columns.
Update clinical ETL to add encounter reference to ICD-10 condition entries for KP2023 encounters. Previously, the encounter reference was missing from these entries, which caused them to be skipped by the FHIR ETL.
Update parse-kp to ingest comorbidity metadata for encounters that were part of the original KP sample stream (2018-2020).