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  1. nf-core-kmerseek nf-core-kmerseek Public

    Nextflow 5 1

  2. kmerseek kmerseek Public

    Efficient protein domain annotation search with reduced amino acid k-mers

    Python 2 1

  3. seanome.org seanome.org Public

    Code for Seanome.org website

    HTML 1

  4. 2024-kmerseek-analysis 2024-kmerseek-analysis Public

    Analysis Scripts for Kmerseek protein search

    Jupyter Notebook 1 1

  5. 2024-sourmash-branchwater-tf-idf 2024-sourmash-branchwater-tf-idf Public

    Exploring term frequency, inverse document frequency calculation for Sourmash branchwater k-mer searches

    Jupyter Notebook

  6. sourmash_plugin_branchwater sourmash_plugin_branchwater Public

    Forked from sourmash-bio/sourmash_plugin_branchwater

    fast, multithreaded sourmash operations: search, compare, and gather.

    Python

Repositories

Showing 8 of 8 repositories
  • seanome.org Public

    Code for Seanome.org website

    HTML 1 MIT 0 7 0 Updated Apr 21, 2025
  • kmerseek Public

    Efficient protein domain annotation search with reduced amino acid k-mers

    Python 2 MIT 1 14 (3 issues need help) 1 Updated Apr 18, 2025
  • 2025-biodata-wealth-inequality Public

    Code to create figures showing wealth inequality of biological sequence data in the Protein Data Bank (PDB), UniProtKB/SwissProt, UniProtKB/TREMBL (AlphaFoldDB), and predicted number of proteins on Earth

    Jupyter Notebook 0 MIT 0 3 0 Updated Mar 13, 2025
  • nf-core-kmerseek Public
    Nextflow 5 MIT 1 4 1 Updated Mar 6, 2025
  • 2025-kmerseek-yc-demo Public

    Kmerseek demo example for YC S25 Application

    Makefile 0 MIT 0 0 0 Updated Mar 6, 2025
  • 2024-kmerseek-analysis Public

    Analysis Scripts for Kmerseek protein search

    Jupyter Notebook 1 MIT 1 4 4 Updated Jan 11, 2025
  • sourmash_plugin_branchwater Public Forked from sourmash-bio/sourmash_plugin_branchwater

    fast, multithreaded sourmash operations: search, compare, and gather.

    Python 0 AGPL-3.0 5 0 0 Updated Oct 29, 2024
  • 2024-sourmash-branchwater-tf-idf Public

    Exploring term frequency, inverse document frequency calculation for Sourmash branchwater k-mer searches

    Jupyter Notebook 0 MIT 0 1 0 Updated Oct 25, 2024

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