Skip to content

Commit

Permalink
typo
Browse files Browse the repository at this point in the history
  • Loading branch information
adamgayoso committed Feb 17, 2022
1 parent 62a5750 commit d837d37
Show file tree
Hide file tree
Showing 3 changed files with 3 additions and 3 deletions.
2 changes: 1 addition & 1 deletion docs/user_guide/models/multivi.rst
Original file line number Diff line number Diff line change
Expand Up @@ -96,7 +96,7 @@ The latent variables, along with their description are summarized in the followi
- Low-dimensional representation capturing the state of a cell.
- N/A
* - :math:`\rho_n \in \Delta^{G-1}`
- Denoised/normalized gene expression. This is a vector that sums to 1 within a cell, unless `size_factor_key is not None` in :class:`~scvi.model.MULTVI.setup_anndata`, in which case this is only force to be non-negative via softplus.
- Denoised/normalized gene expression. This is a vector that sums to 1 within a cell, unless `size_factor_key is not None` in :class:`~scvi.model.MULTVI.setup_anndata`, in which case this is only forced to be non-negative via softplus.
- ``px_scale``
* - :math:`\ell_n \in (0, \infty)`
- Library size for RNA.
Expand Down
2 changes: 1 addition & 1 deletion docs/user_guide/models/scvi.rst
Original file line number Diff line number Diff line change
Expand Up @@ -90,7 +90,7 @@ The latent variables, along with their description are summarized in the followi
- Low-dimensional representation capturing the state of a cell.
- N/A
* - :math:`\rho_n \in \Delta^{G-1}`
- Denoised/normalized gene expression. This is a vector that sums to 1 within a cell, unless `size_factor_key is not None` in :class:`~scvi.model.SCVI.setup_anndata`, in which case this is only force to be non-negative via softplus.
- Denoised/normalized gene expression. This is a vector that sums to 1 within a cell, unless `size_factor_key is not None` in :class:`~scvi.model.SCVI.setup_anndata`, in which case this is only forced to be non-negative via softplus.
- ``px_scale``
* - :math:`\ell_n \in (0, \infty)`
- Library size for RNA. Here it is modeled as a latent variable, but the recent default for scVI is to treat library size as observed, equal to the total RNA UMI count of a cell. This can be controlled by passing ``use_observed_lib_size=False`` to :class:`~scvi.model.SCVI`. The library size can also be set manually using `size_factor_key` in :class:`~scvi.model.SCVI.setup_anndata`.
Expand Down
2 changes: 1 addition & 1 deletion docs/user_guide/models/totalvi.rst
Original file line number Diff line number Diff line change
Expand Up @@ -115,7 +115,7 @@ The latent variables, along with their description are summarized in the followi
- Low-dimensional representation capturing joint state of a cell
- N/A
* - :math:`\rho_n \in \Delta^{G-1}`
- Denoised/normalized gene expression. This is a vector that sums to 1 within a cell, unless `size_factor_key is not None` in :class:`~scvi.model.TOTALVI.setup_anndata`, in which case this is only force to be non-negative via softplus.
- Denoised/normalized gene expression. This is a vector that sums to 1 within a cell, unless `size_factor_key is not None` in :class:`~scvi.model.TOTALVI.setup_anndata`, in which case this is only forced to be non-negative via softplus.
- ``px_["scale"]``
* - :math:`\alpha_n \in [1, \infty)^T`
- Foreground scaling factor for proteins, identifies the mixture distribution (see below)
Expand Down

0 comments on commit d837d37

Please sign in to comment.