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Backport PR #2942: docs: automated update of tutorials
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github-actions[bot] authored and ori-kron-wis committed Aug 19, 2024
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14 changes: 14 additions & 0 deletions CHANGELOG.md
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#### Added

- Add `scvi.external.poissonvi.get_region_factors` {pr}`2940`.
- {attr}`scvi.settings.dl_persistent_workers` allows using persistent workers in
{class}`scvi.dataloaders.AnnDataLoader` {pr}`2924`.
- Add option for using external indexes in data splitting classes that are under `scvi.dataloaders`
by passing `external_indexing=list[train_idx,valid_idx,test_idx]` as well as in all models
available {pr}`2902`.
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- {meth}`~scvi.model.SCVI.get_normalized_expression` fixed for Poisson distribution and
Negative Binomial with latent_library_size {pr}`2915`.
- Fix {meth}`scvi.module.VAE.marginal_ll` when `n_mc_samples_per_pass=1` {pr}`2362`.
- {meth}`scvi.module.VAE.marginal_ll` when `n_mc_samples_per_pass=1` {pr}`2362`.
- Enable option to drop_last minibatch during training by `datasplitter_kwargs={"drop_last": True}`
{pr}`2926`.
- Fix JAX to be deterministic on CUDA when seed is manually set {pr}`2923`.

#### Removed

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## Version 1.1

### 1.1.6 (2024-08-19)

#### Fixed

- Breaking change: In `scvi.autotune._manager` we changed the parameter in RunConfig from
`local_dir` to `storage_path` see issue `2908` {pr}`2689`.

### 1.1.5 (2024-06-30)

### 1.1.4 (2024-06-30)
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2 changes: 1 addition & 1 deletion docs/tutorials/notebooks

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