Prep 0.15.3 release (#1460)

* bump version, jinja bound, notes in index * update release notes * update notebooks
scverse · Mar 25, 2022 · 37c017f · 37c017f
1 parent 8d02fb1
commit 37c017f
Show file tree

Hide file tree

Showing 4 changed files with 13 additions and 4 deletions.
diff --git a/docs/release_notes/index.md b/docs/release_notes/index.md
@@ -8,6 +8,8 @@ is available in the [commit logs](https://github.com/YosefLab/scvi-tools/commits
 ```{toctree}
 :maxdepth: 2
 
+v0.15.3
+v0.15.2
 v0.15.1
 v0.15.0
 ```

diff --git a/docs/release_notes/v0.15.3.md b/docs/release_notes/v0.15.3.md
@@ -1,18 +1,23 @@
-# New in 0.15.3 (2022-MM-DD)
-
+# New in 0.15.3 (2022-03-24)
 ## Changes
 
 ## Bug fixes
 
 -   Raise `NotImplementedError` when `categorical_covariate_keys` are used with {meth}`scvi.model.SCANVI.load_query_data`. ([#1458]).
 -   Fix behavior when `continuous_covariate_keys` are used with {meth}`scvi.model.SCANVI.classify`. ([#1458]).
 -   Unlabeled category values are automatically populated when {meth}`scvi.model.SCANVI.load_query_data` run on `adata_target` missing labels column. ([#1458]).
+- Fix dataframe rendering in dark mode docs ([#1448])
+- Fix variance constraint in {class}`~scvi.model.AmortizedLDA` that set an artifical bound on latent topic variance ([#1445]).
+- Fix {meth}`scvi.model.base.ArchesMixin.prepare_query_data` to work cross device (e.g., model trained on cuda but method used on cpu; see [#1451]).
 
 ## Contributors
 
 -   [@jjhong922]
 -   [@adamgayoso]
 
+[#1451]: https://github.com/YosefLab/scvi-tools/pull/1451
+[#1445]: https://github.com/YosefLab/scvi-tools/pull/1445
+[#1448]: https://github.com/YosefLab/scvi-tools/pull/1448
 [#1458]: https://github.com/YosefLab/scvi-tools/pull/1458
 [@adamgayoso]: https://github.com/adamgayoso
 [@jjhong922]: https://github.com/jjhong922
diff --git a/docs/tutorials/notebooks b/docs/tutorials/notebooks
diff --git a/pyproject.toml b/pyproject.toml
@@ -27,7 +27,7 @@ packages = [
   {include = "scvi"},
 ]
 readme = "README.md"
-version = "0.15.2"
+version = "0.15.3"
 
 [tool.poetry.dependencies]
 anndata = ">=0.7.5"
@@ -80,13 +80,15 @@ torch = ">=1.8.0"
 torchmetrics = ">=0.6.0"
 tqdm = ">=4.56.0"
 typing_extensions = {version = "*", python = "<3.8", optional = true}
+Jinja2 = {version = "<3.1.0", optional = true}
 
 [tool.poetry.extras]
 dev = ["black", "pytest", "flake8", "codecov", "scanpy", "loompy", "jupyter", "nbformat", "nbconvert", "pre-commit", "isort"]
 docs = [
   "sphinx",
   "scanpydoc",
   "nbsphinx",
+  "Jinja2", # https://github.com/spatialaudio/nbsphinx/issues/641#issuecomment-1078061858
   "nbsphinx-link",
   "ipython",
   "furo",