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Add zarr3 streaming v0 #7941

Merged
merged 32 commits into from
Aug 14, 2024
Merged

Add zarr3 streaming v0 #7941

merged 32 commits into from
Aug 14, 2024

Commits on Jul 22, 2024

  1. WIP add zarr3 streaming 

    - Added mag/zarr.json & mag/coords route for datasets (not annotations)
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 22, 2024
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Commits on Jul 24, 2024

  1. manage minimal zarr3 support for viewing a dataset and viewing an ann… 

    …otation
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 24, 2024
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Commits on Jul 26, 2024

  1. add basic zarr 3 ngff v2 group header route

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 26, 2024
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  2. add zarr 3 ngff v2 group header route for annotations

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 26, 2024
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  3. merge Zarr3StreamController into ZarrStreamingController

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 26, 2024
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  4. ensure full match when parsing zarr coordinates to avoid parsing any … 

    …non-numerical characters
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 26, 2024
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Commits on Jul 30, 2024

  1. Merge branch 'master' of github.com:scalableminds/webknossos into add… 

    …-zarr3-streaming-v0
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 30, 2024
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  2. make NgffMetadataV2 nd compatible

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 30, 2024
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  3. refactor code

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 30, 2024
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  4. remove Zarr3StreamingController.scala

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 30, 2024
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  5. minor code fixes; mostly remove unused imports

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 30, 2024
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Commits on Jul 31, 2024

  1. Merge branch 'master' into add-zarr3-streaming-v0

    @MichaelBuessemeyer
    MichaelBuessemeyer authored Jul 31, 2024
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  2. Merge branch 'master' of github.com:scalableminds/webknossos into add… 

    …-zarr3-streaming-v0
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 31, 2024
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  3. Merge branch 'add-zarr3-streaming-v0' of github.com:scalableminds/web… 

    …knossos into add-zarr3-streaming-v0
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 31, 2024
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  4. remove fixed full length match of zarr coordinate regex parsing; 

    - wk seems to send c.0.x.y.z requests and the c at the start does not match with the regex resulting in invalid coordinate parsing
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 31, 2024
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  5. add c. as a prefix to the coordinate parsing regex as defined by the … 

    …zarr spec
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 31, 2024
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  6. exclude leading c from the zarr3 coordinate parsing

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Jul 31, 2024
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Commits on Aug 1, 2024

  1. Merge branch 'master' into add-zarr3-streaming-v0

    @MichaelBuessemeyer
    MichaelBuessemeyer authored Aug 1, 2024
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Commits on Aug 5, 2024

  1. apply pr feedback

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Aug 5, 2024
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  2. Merge branch 'add-zarr3-streaming-v0' of github.com:scalableminds/web… 

    …knossos into add-zarr3-streaming-v0
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Aug 5, 2024
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  3. remove unused imports and format code

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Aug 5, 2024
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Commits on Aug 6, 2024

  1. add datasource-properties.json and dir listing routes to zarr 3 strea… 

    …ming
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Aug 6, 2024
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  2. format code

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Aug 6, 2024
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Commits on Aug 7, 2024

  1. Merge branch 'master' into add-zarr3-streaming-v0

    @MichaelBuessemeyer
    MichaelBuessemeyer authored Aug 7, 2024
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Commits on Aug 13, 2024

  1. Merge branch 'master' of github.com:scalableminds/webknossos into add… 

    …-zarr3-streaming-v0
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Aug 13, 2024
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  2. add changelog entry

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Aug 13, 2024
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  3. fix Zarr3GroupHeader json serialization format

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Aug 13, 2024
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  4. fix backend format

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Aug 13, 2024
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  5. Update webknossos-datastore/app/com/scalableminds/webknossos/datastor… 

    …e/datareaders/zarr/NgffMetadataV0_5.scala
    @normanrz
    normanrz authored Aug 13, 2024
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Commits on Aug 14, 2024

  1. add comments about why manual json serializer is needed

    @MichaelBuessemeyer
    MichaelBuessemeyer committed Aug 14, 2024
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  2. Merge branch 'add-zarr3-streaming-v0' of github.com:scalableminds/web… 

    …knossos into add-zarr3-streaming-v0
    @MichaelBuessemeyer
    MichaelBuessemeyer committed Aug 14, 2024
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  3. Merge branch 'master' into add-zarr3-streaming-v0

    @MichaelBuessemeyer
    MichaelBuessemeyer authored Aug 14, 2024
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