Skip to content

Commit

Permalink
Update CRAN comments
Browse files Browse the repository at this point in the history
  • Loading branch information
dcollins15 committed Dec 21, 2024
1 parent 27476c8 commit bda91eb
Showing 1 changed file with 19 additions and 16 deletions.
35 changes: 19 additions & 16 deletions cran-comments.md
Original file line number Diff line number Diff line change
@@ -1,31 +1,34 @@
# Seurat v5.1.0
# Seurat v5.2.0

## Test environments
* local ubuntu 20.04 install, R 4.3.2
* local macOS 14.1, R 4.4.0
* local ubuntu 20.04 install, R 4.4.2
* win-builder (oldrelease, release, devel)
* mac-builder (devel)

We were unable to test on r-release on mac-builder because the portal seemed to point to the wrong version.

## R CMD check results

There were no ERRORs or WARNINGs

There were two NOTEs

> Suggests or Enhances not in mainstream repositories:
> BPCells, presto
> Availability using Additional_repositories specification:
> BPCells yes https://bnprks.r-universe.dev
> presto yes https://satijalab.r-universe.dev
There was one NOTE

> * checking package dependencies ... NOTE
> Package suggested but not available for checking: 'BPCells', 'presto'
❯ checking CRAN incoming feasibility ... [12s/61s] NOTE
Maintainer: ‘Rahul Satija <[email protected]>

Suggests or Enhances not in mainstream repositories:
BPCells, enrichR, presto
Availability using Additional_repositories specification:
BPCells yes https://bnprks.r-universe.dev
enrichR yes https://cran.r-universe.dev
presto yes https://satijalab.r-universe.dev

BPCells and presto are hosted on R-universe and used conditionally in Seurat.
BPCells, enrichR, and presto are hosted on R-universe and used conditionally in Seurat.

## Downstream dependencies

There are three packages that depend on Seurat: CACIMAR, scCustomize, and SCdeconR; this update does not impact their functionality
There are 3 packages that depend on Seurat: CACIMAR, scCustomize, and SCdeconR; this update does not impact their functionality.

There are 30 packages that import Seurat: AnanseSeurat, APackOfTheClones, bbknnR, CAMML, DR.SC, DWLS, GeneNMF, ggsector, mixhvg, nebula, Platypus, PRECAST, ProFAST, rPanglaoDB, scAnnotate, scaper, sccca, scDiffCom, scGate, scGOclust, scMappR, scperturbR, scpoisson, SCRIP, scRNAstat, SignacX, SoupX, SPECK, STREAK, and tidyseurat; this update does not impact their functionality
There are 34 packages that import Seurat: AnanseSeurat, APackOfTheClones, bbknnR, CAESAR.Suite, CAMML, DR.SC, DWLS, GeneNMF, ggsector, mixhvg, nebula, Platypus, PoweREST, PRECAST, ProFAST, rPanglaoDB, scAnnotate, scaper, sccca, scDiffCom, scGate, scGOclust, SCIntRuler, scMappR, scperturbR, scpoisson, SCRIP, scRNAstat, SignacX, SoupX, SpaCCI, SPECK, STREAK, and tidyseurat; this update does not impact their functionality.

There are 22 packages that suggest Seurat: BisqueRNA, Canek, cellpypes, CIARA, ClustAssess, clustree, combiroc, conos, countland, CRMetrics, CytoSimplex, DIscBIO, dyngen, grandR, harmony, RESET, rliger, SCORPIUS, SCpubr, Signac, treefit, and VAM; this update does not impact their functionality
There are 27 packages that suggest Seurat: BisqueRNA, Canek, cellpypes, CIARA, ClustAssess, clustree, combiroc, conos, countland, CRMetrics, CytoSimplex, DIscBIO, dyngen, easybio, grandR, harmony, laminr, mxfda, RESET, rliger, SCORPIUS, SCpubr, scregclust, Signac, SuperCell, treefit, and VAM; this update does not impact their functionality.

0 comments on commit bda91eb

Please sign in to comment.