-
Notifications
You must be signed in to change notification settings - Fork 928
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
27476c8
commit bda91eb
Showing
1 changed file
with
19 additions
and
16 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,31 +1,34 @@ | ||
# Seurat v5.1.0 | ||
# Seurat v5.2.0 | ||
|
||
## Test environments | ||
* local ubuntu 20.04 install, R 4.3.2 | ||
* local macOS 14.1, R 4.4.0 | ||
* local ubuntu 20.04 install, R 4.4.2 | ||
* win-builder (oldrelease, release, devel) | ||
* mac-builder (devel) | ||
|
||
We were unable to test on r-release on mac-builder because the portal seemed to point to the wrong version. | ||
|
||
## R CMD check results | ||
|
||
There were no ERRORs or WARNINGs | ||
|
||
There were two NOTEs | ||
|
||
> Suggests or Enhances not in mainstream repositories: | ||
> BPCells, presto | ||
> Availability using Additional_repositories specification: | ||
> BPCells yes https://bnprks.r-universe.dev | ||
> presto yes https://satijalab.r-universe.dev | ||
There was one NOTE | ||
|
||
> * checking package dependencies ... NOTE | ||
> Package suggested but not available for checking: 'BPCells', 'presto' | ||
❯ checking CRAN incoming feasibility ... [12s/61s] NOTE | ||
Maintainer: ‘Rahul Satija <[email protected]>’ | ||
|
||
Suggests or Enhances not in mainstream repositories: | ||
BPCells, enrichR, presto | ||
Availability using Additional_repositories specification: | ||
BPCells yes https://bnprks.r-universe.dev | ||
enrichR yes https://cran.r-universe.dev | ||
presto yes https://satijalab.r-universe.dev | ||
|
||
BPCells and presto are hosted on R-universe and used conditionally in Seurat. | ||
BPCells, enrichR, and presto are hosted on R-universe and used conditionally in Seurat. | ||
|
||
## Downstream dependencies | ||
|
||
There are three packages that depend on Seurat: CACIMAR, scCustomize, and SCdeconR; this update does not impact their functionality | ||
There are 3 packages that depend on Seurat: CACIMAR, scCustomize, and SCdeconR; this update does not impact their functionality. | ||
|
||
There are 30 packages that import Seurat: AnanseSeurat, APackOfTheClones, bbknnR, CAMML, DR.SC, DWLS, GeneNMF, ggsector, mixhvg, nebula, Platypus, PRECAST, ProFAST, rPanglaoDB, scAnnotate, scaper, sccca, scDiffCom, scGate, scGOclust, scMappR, scperturbR, scpoisson, SCRIP, scRNAstat, SignacX, SoupX, SPECK, STREAK, and tidyseurat; this update does not impact their functionality | ||
There are 34 packages that import Seurat: AnanseSeurat, APackOfTheClones, bbknnR, CAESAR.Suite, CAMML, DR.SC, DWLS, GeneNMF, ggsector, mixhvg, nebula, Platypus, PoweREST, PRECAST, ProFAST, rPanglaoDB, scAnnotate, scaper, sccca, scDiffCom, scGate, scGOclust, SCIntRuler, scMappR, scperturbR, scpoisson, SCRIP, scRNAstat, SignacX, SoupX, SpaCCI, SPECK, STREAK, and tidyseurat; this update does not impact their functionality. | ||
|
||
There are 22 packages that suggest Seurat: BisqueRNA, Canek, cellpypes, CIARA, ClustAssess, clustree, combiroc, conos, countland, CRMetrics, CytoSimplex, DIscBIO, dyngen, grandR, harmony, RESET, rliger, SCORPIUS, SCpubr, Signac, treefit, and VAM; this update does not impact their functionality | ||
There are 27 packages that suggest Seurat: BisqueRNA, Canek, cellpypes, CIARA, ClustAssess, clustree, combiroc, conos, countland, CRMetrics, CytoSimplex, DIscBIO, dyngen, easybio, grandR, harmony, laminr, mxfda, RESET, rliger, SCORPIUS, SCpubr, scregclust, Signac, SuperCell, treefit, and VAM; this update does not impact their functionality. |