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XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (81 seq) #82

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BorisUitham opened this issue May 21, 2023 · 6 comments
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XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (81 seq) #82

BorisUitham opened this issue May 21, 2023 · 6 comments
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designated New mutations Lineage with an unusual/new/interesting mutation To be proposed Green light for proposal
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@BorisUitham
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BorisUitham commented May 21, 2023

Earliest sequence: 2023-04-26
Recent sequence: 2023-05-08
GISAID query: G12467T, C21812A

While S:L84I has popped up throughout the pandemic especially in ba.5 lineages, orf1ab:a4068s (NSP8_A126S EDITED) is very recently getting traction, mostly in xbb.1.5 so far but also bq* and ch*.

https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?nucMutations=G12467T%2CC21812A&

xbb1162

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_5aaf7_a8ff90.json?f_userOrOld=uploaded%20sample&label=id:node_8433596

@FedeGueli FedeGueli added the New mutations Lineage with an unusual/new/interesting mutation label May 21, 2023
@BorisUitham BorisUitham changed the title XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (21 seq) XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (22 seq) May 22, 2023
@BorisUitham
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1 from Taiwan

@BorisUitham BorisUitham changed the title XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (22 seq) XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (25 seq) May 23, 2023
@BorisUitham BorisUitham changed the title XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (25 seq) XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (28 seq) May 26, 2023
@BorisUitham BorisUitham changed the title XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (28 seq) XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (30 seq) May 27, 2023
@BorisUitham BorisUitham changed the title XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (30 seq) XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (35 seq) May 30, 2023
@BorisUitham BorisUitham changed the title XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (35 seq) XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (36 seq) Jun 1, 2023
@BorisUitham BorisUitham changed the title XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (36 seq) XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (42 seq) Jun 3, 2023
@BorisUitham BorisUitham changed the title XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (42 seq) XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (52 seq) Jun 10, 2023
@BorisUitham BorisUitham changed the title XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (52 seq) XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (66 seq) Jun 15, 2023
@BorisUitham BorisUitham changed the title XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (66 seq) XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (73 seq) Jun 18, 2023
@BorisUitham BorisUitham changed the title XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (73 seq) XBB.1.16.2 with S:L84I, ORF1ab:A4068S in China (81 seq) Jun 20, 2023
@FedeGueli
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I think this should be proposed , even if it is not as fast as Orf1b:D54N it is still growing steadily.

@FedeGueli FedeGueli added the To be proposed Green light for proposal label Jun 22, 2023
@FedeGueli
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FedeGueli commented Jun 22, 2023

@BorisUitham i m proposing a sub branch with 456L, tell me if you were tracking already it

@BorisUitham
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BorisUitham commented Jun 22, 2023

@FedeGueli i havent seen that, go ahead and propose it!
Ediy: i dont see 456l under this query, do you mean of the parent lineage xbb.1.16.2?

@BorisUitham
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Proposed at cov-lineages/pango-designation#2066

@FedeGueli
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Designated GY.1

@xz-keg xz-keg added this to the GY.1 milestone Dec 17, 2023
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