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Sublineage of GY.1 acquired S:F456L - 2 sequences #238

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FedeGueli opened this issue Jun 22, 2023 · 1 comment
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Sublineage of GY.1 acquired S:F456L - 2 sequences #238

FedeGueli opened this issue Jun 22, 2023 · 1 comment
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@FedeGueli
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FedeGueli commented Jun 22, 2023 •
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Gisaid query: G12467T, C21812A,T22928C but none of the two samples collected in NYC are yet on Gisaid.

This little cluster is a sublineage of GY.1 proposed in #82 by @BorisUitham

Tree:
Schermata 2023-06-22 alle 15 05 07
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice2_genome_1ae76_373cc0.json?c=gt-S_456&label=id:node_6573321

Defining mutations:
XBB.1.16.2 >> > [ Orf1a: A4068S (G12467T) > S:L84I (C21812A) ] = #82 >> S:Q146K (C21998A),S:F456L (T22928C)

Samples:
USA/NY-PRL-230601_81A11/2023|OR122393.1|2023-05-28
USA/NY-CDC-QDX81183308/2023|OR125893.1|2023-05-31
@BorisUitham BorisUitham mentioned this issue Jun 22, 2023
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@FedeGueli FedeGueli changed the title Sublineage of #82 (XBB.1.16.2 + S:L84I) acquired S:F456L - 2 sequences Sublineage of GY.1 acquired S:F456L - 2 sequences Jul 2, 2023
@FedeGueli
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1 on Gisaid now.

@FedeGueli FedeGueli closed this as not planned Won't fix, can't repro, duplicate, stale Jul 13, 2023
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