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XBB.2.3.2 sublineage gained S:G181A 100 sequences #183

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FedeGueli opened this issue Jun 14, 2023 · 2 comments
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XBB.2.3.2 sublineage gained S:G181A 100 sequences #183

FedeGueli opened this issue Jun 14, 2023 · 2 comments
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designated New mutations Lineage with an unusual/new/interesting mutation
Milestone
HH.1.1

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@FedeGueli
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Defining mutations:
XBB.2.3.2 >> G24193A > C26228A > Orf1a:T2977I (C9195T) > T20697C > C13860T > S:G181A (G22104C)
Then sublineage with >> C1973T, Orf1a:A2529V (C7851T) , C13115T, C15081T

Queries:
Main lineage : C13860T,G22104C,T20697C : 66 samples :
countries
Schermata 2023-06-14 alle 11 21 55

Sublineage with AY.4's Orf1a:A2529V : C1973T, C7851T , C13115T, C15081T : 12 samples SIngapore

Tree:
Schermata 2023-06-14 alle 11 24 23

Schermata 2023-06-14 alle 11 24 49
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_3d02d_97e0e0.json?c=country&label=id:node_6938017ùù
@FedeGueli FedeGueli changed the title XBB.2.3.2 sublineage gained S:G181A and then Orf1a:A2529V (AY.4 defining) XBB.2.3.2 sublineage gained S:G181A and then Orf1a:A2529V (AY.4 defining) 66/12 sequences Jun 14, 2023
@FedeGueli FedeGueli added the New mutations Lineage with an unusual/new/interesting mutation label Jun 14, 2023
@FedeGueli FedeGueli changed the title XBB.2.3.2 sublineage gained S:G181A and then Orf1a:A2529V (AY.4 defining) 66/12 sequences XBB.2.3.2 sublineage gained S:G181A and then Orf1a:A2529V (AY.4 defining) 67/12 sequences Jun 16, 2023
@FedeGueli FedeGueli changed the title XBB.2.3.2 sublineage gained S:G181A and then Orf1a:A2529V (AY.4 defining) 67/12 sequences XBB.2.3.2 sublineage gained S:G181A and then Orf1a:A2529V (AY.4 defining) 69/12 sequences Jun 21, 2023
@FedeGueli FedeGueli changed the title XBB.2.3.2 sublineage gained S:G181A and then Orf1a:A2529V (AY.4 defining) 69/12 sequences XBB.2.3.2 sublineage gained S:G181A and then Orf1a:A2529V (AY.4 defining) 91/14 sequences Jul 2, 2023
@FedeGueli FedeGueli changed the title XBB.2.3.2 sublineage gained S:G181A and then Orf1a:A2529V (AY.4 defining) 91/14 sequences XBB.2.3.2 sublineage gained S:G181A 91 sequences Jul 2, 2023
@FedeGueli FedeGueli changed the title XBB.2.3.2 sublineage gained S:G181A 91 sequences XBB.2.3.2 sublineage gained S:G181A 92 sequences Jul 5, 2023
@FedeGueli FedeGueli changed the title XBB.2.3.2 sublineage gained S:G181A 92 sequences XBB.2.3.2 sublineage gained S:G181A 95 sequences Jul 9, 2023
@FedeGueli
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slower than expected

@FedeGueli FedeGueli changed the title XBB.2.3.2 sublineage gained S:G181A 95 sequences XBB.2.3.2 sublineage gained S:G181A 100 sequences Jul 13, 2023
FedeGueli referenced this issue in cov-lineages/pango-designation Jul 14, 2023
@corneliusroemer
Designate HH.1.1 (XBB.2.3.2.1.1, S:G181A) with 100 seqs
a324a89
@FedeGueli
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HH.1.1

FedeGueli added a commit to FedeGueli/pango-designation that referenced this issue Jul 17, 2023
@FedeGueli
Update lineage_notes.txt
2c329ad 
Add  sars-cov-2-variants/lineage-proposals#183 to HH.1.1
@FedeGueli FedeGueli mentioned this issue Jul 17, 2023
Merged
corneliusroemer pushed a commit to cov-lineages/pango-designation that referenced this issue Jul 17, 2023
@FedeGueli
Update lineage_notes.txt (#2103)
c2f0324 
Add  sars-cov-2-variants/lineage-proposals#183 to HH.1.1
@xz-keg xz-keg added this to the HH.1.1 milestone Dec 17, 2023
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