Docker instructions
docker pull sarahjeeze/partiscontainer
docker built -t partisconatiner .
docker run \
-v /tmp/44fd3574-ca1e-49b5-8955-51ec5aa2609e/INPUT:/INPUT \
-v /tmp/44fd3574-ca1e-49b5-8955-51ec5aa2609e/OUTPUT:/OUTPUT \
-v /tmp/44fd3574-ca1e-49b5-8955-51ec5aa2609e/GERMLINES:/GERMLINES \
partiscontainer start.sh species receptor
Output file - finalOutput.tsv in output folder.