Code

nf-core v2.14 update#99

Code

Merged

tkchafin merged 34 commits intosanger-tol:devsanger-tol/readmapping:devfrom tkchafin:nf_core_updatetkchafin/readmapping:nf_core_updateCopy head branch name to clipboardAug 1, 2024

+6,985-1,699

Commits

Commits on Jul 17, 2024

• nf-core modules update and necessary integrations

  tkchafin

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  539a2fd

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• samtools:1.17 -> 1.20 in local modules

  tkchafin

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  089f2b7

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• installing new nf-core subworkflows

  tkchafin

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  eea3db1

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• schema updates

  tkchafin

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  6cfc646

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Commits on Jul 18, 2024

• nf_validation conversion

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  bdfb8b9

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Commits on Jul 19, 2024

• added tool citations; removed old samplesheet_check

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  28c683c

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• corrected citations

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• add compliant template name

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• Template update for nf-core/tools version 2.14.1

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  642ebab

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• template update 2.14

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• revert nf-core sync changes

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Commits on Jul 22, 2024

• Restore .github directory from dev branch

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  b57595f

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• schema update

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  94a10f0

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• update .gitignore

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  26b3818

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• clean up

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  ed898a6

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• clean up

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  20d2a51

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• nf-core linting

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  af0d8a3

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• revert some template changes

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  14dc591

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• revert some template changes

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  6404674

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• revert some template changes

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  5224fdd

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• cleanup

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• python black linting

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  8791fec

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• nf-core linting

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• nf-core linting

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  6660c19

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• nf-core linting

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• nf-core linting

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Commits on Jul 23, 2024

• Merge branch 'dev' into nf_core_update

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  81c32e0

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• nf-core linting

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  161f3f1

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• Merge branch 'nf_core_update' of https://github.com/tkchafin/readmapping into nf_core_update

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Commits on Jul 28, 2024

• nf-core lint

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• prettier lint

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  77b8852

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Commits on Jul 31, 2024

• revert projectDir change in nextflow_schema.json

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  3ffb042

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Commits on Aug 1, 2024

• outdir for test profile

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• outdir for test profile

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