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The tar archive includes a top-level directory
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muffato committed Aug 1, 2023
1 parent 60765f6 commit 413bbd3
Showing 1 changed file with 1 addition and 3 deletions.
4 changes: 1 addition & 3 deletions .github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -42,13 +42,11 @@ jobs:
- name: Download the BUSCO lineage database
run: |
mkdir busco_database
curl -L https://tolit.cog.sanger.ac.uk/test-data/resources/busco_2021_06_reduced.tar.gz | tar -C busco_database -xzf -
ls busco_database
- name: Run pipeline with test data
# You can customise CI pipeline run tests as required
# For example: adding multiple test runs with different parameters
# Remember that you can parallelise this by using strategy.matrix
run: |
nextflow run ${GITHUB_WORKSPACE} -profile test,docker --taxdump $PWD/ncbi_taxdump --busco $PWD/busco_database --outdir ./results
nextflow run ${GITHUB_WORKSPACE} -profile test,docker --taxdump $PWD/ncbi_taxdump --busco $PWD/busco_2021_06_reduced --outdir ./results

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