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-C needs to be before
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muffato committed Aug 1, 2023
1 parent b5937fc commit 1e04370
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions .github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -38,12 +38,12 @@ jobs:
- name: Download the NCBI taxdump database
run: |
mkdir ncbi_taxdump
curl -L https://ftp.ncbi.nih.gov/pub/taxonomy/new_taxdump/new_taxdump.tar.gz | tar xzf -C ncbi_taxdump -
curl -L https://ftp.ncbi.nih.gov/pub/taxonomy/new_taxdump/new_taxdump.tar.gz | tar -C ncbi_taxdump xzf -
- name: Download the BUSCO lineage database
run: |
mkdir busco_database
curl -L https://tolit.cog.sanger.ac.uk/test-data/resources/busco_2021_06_reduced.tar.gz | tar xzf -C busco_database -
curl -L https://tolit.cog.sanger.ac.uk/test-data/resources/busco_2021_06_reduced.tar.gz | tar -C busco_database xzf -
ls busco_database
- name: Run pipeline with test data
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