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Fixing SAMRecordSetBuilder for non-default headers #420

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wants to merge 10 commits into from
Closed

Fixing SAMRecordSetBuilder for non-default headers #420

wants to merge 10 commits into from

Commits on Dec 15, 2015

  1. added indel support to SamLocusIterator and tests for it

    @magicDGS
    magicDGS committed Dec 15, 2015
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  2. fixed index issue with insertions

    @magicDGS
    magicDGS committed Dec 15, 2015
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  3. fixed hard-tabs

    @magicDGS
    magicDGS committed Dec 15, 2015
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Commits on Dec 18, 2015

  1. lazy init of LocusInfo indels and refactoring

    @magicDGS
    magicDGS committed Dec 18, 2015
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  2. extracted accumulator offset computation to method

    @magicDGS
    magicDGS committed Dec 18, 2015
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  3. clarified accumulateIndels

    @magicDGS
    magicDGS committed Dec 18, 2015
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  4. changed tests to use SAMRecordSetBuilder

    @magicDGS
    magicDGS committed Dec 18, 2015
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  5. fixed tests

    @magicDGS
    magicDGS committed Dec 18, 2015
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  6. fixed setUncovered in test

    @magicDGS
    magicDGS committed Dec 18, 2015
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Commits on Jan 2, 2016

  1. fixed header issue in SAMRecordSetBuilder

    @magicDGS
    magicDGS committed Jan 2, 2016
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