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Fix HtsCRAMCodec test data provider. #1632

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Nov 8, 2022
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Fix HtsCRAMCodec test data provider. #1632

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10 changes: 5 additions & 5 deletions src/test/java/htsjdk/beta/codecs/reads/cram/HtsCRAMCodec30And21QueryTest.java
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Original file line number Diff line number Diff line change
Expand Up @@ -586,18 +586,18 @@ public void testQueryUnmapped(
public Object[][] alignmentStartQueries() {
return new Object[][] {
// cram file, reference, query contig, alignment start query, number of reads with matching alignment start
{cramQueryWithCRAI, cramQueryReference, "20", 100013, 2},
{cramQueryWithLocalCRAI, cramQueryReference, "20", 100013, 2},
{cramQueryWithBAI, cramQueryReference, "20", 100013, 2},
{cramQueryWithCRAI, cramQueryReference, "20", 100013L, 2},
{cramQueryWithLocalCRAI, cramQueryReference, "20", 100013L, 2},
{cramQueryWithBAI, cramQueryReference, "20", 100013L, 2},
// tests to ensure that query results on inputs that have matching reads that are followed by reads
// in the same container that don't match the alignment start are properly constrained to only the
// matching reads
{new HtsPath(TEST_DATA_DIR + "mitoAlignmentStartTest.cram"),
new HtsPath(TEST_DATA_DIR + "mitoAlignmentStartTest.fa"),
"Mito", 631, 24},
"Mito", 631L, 24},
{new HtsPath(TEST_DATA_DIR + "mitoAlignmentStartTestGATKGen.cram"),
new HtsPath(TEST_DATA_DIR + "mitoAlignmentStartTest.fa"),
"Mito", 631, 24},
"Mito", 631L, 24},
};
}

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