Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Make VCFHeader not throw exception if contig header lines lack length field #1418

Merged
merged 3 commits into from
Oct 7, 2019
Merged

Make VCFHeader not throw exception if contig header lines lack length field #1418

merged 3 commits into from
Oct 7, 2019

Commits on Oct 7, 2019

  1. Make VCFHeader not throw exception if contig header lines lack length… 

    … field
    @cwhelan
    cwhelan committed Oct 7, 2019
    Configuration menu
    Copy the full SHA
    1f0249d View commit details
    Browse the repository at this point in the history

  2. Per PR comments, change to returning a header line with length set to… 

    … SAMSequenceRecord.UNKNOWN_SEQUENCE_LENGTH
    @cwhelan
    cwhelan committed Oct 7, 2019
    Configuration menu
    Copy the full SHA
    c8150b7 View commit details
    Browse the repository at this point in the history

  3. Update comment and assertion to reflect the fact that ContigHeaderLin… 

    …e.getSAMSequenceRecord will no longer return null
    @cwhelan
    cwhelan committed Oct 7, 2019
    Configuration menu
    Copy the full SHA
    ef6f244 View commit details
    Browse the repository at this point in the history