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Changes to FastaReferenceWriter #1285

Merged
merged 3 commits into from
Feb 18, 2019
Merged

Changes to FastaReferenceWriter #1285

merged 3 commits into from
Feb 18, 2019

Commits on Feb 16, 2019

  1. moving HttpUtilsTest to externalApi test task 

    * HttpUtilsTest is flakey because it connects to remote web servers.
Moved it to the testExternalAPIs test task
* changed a broken link so that the tests pass again
    @lbergelson
    lbergelson committed Feb 16, 2019
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  2. Changes to FastaReferenceWriter 

    * make sure the OutputStreams are always buffered
* change close behavior to be more likely to close all output streams in
the event of an early shutdown
* loosen restriction from BufferedWriter to Writer in
SAMSequenceDictionaryCodec and SAMTextHeaderCodec
    @lbergelson
    lbergelson committed Feb 16, 2019
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  3. remove extraneous import

    @lbergelson
    lbergelson committed Feb 16, 2019
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