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update CramCompressionRecord.isPlaced() to make it APDelta-aware #1284

Merged
merged 20 commits into from
Feb 21, 2019
Merged

update CramCompressionRecord.isPlaced() to make it APDelta-aware #1284

merged 20 commits into from
Feb 21, 2019

Commits on Feb 14, 2019

  1. update isPlaced() to make it APDelta-aware

    @jmthibault79
    jmthibault79 committed Feb 14, 2019
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  2. test updates

    @jmthibault79
    jmthibault79 committed Feb 14, 2019
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  3. oops

    @jmthibault79
    jmthibault79 committed Feb 14, 2019
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Commits on Feb 15, 2019

  1. APDelta -> usePositionDeltaEncoding

    @jmthibault79
    jmthibault79 committed Feb 15, 2019
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  2. clarify that these are unitialized

    @jmthibault79
    jmthibault79 committed Feb 15, 2019
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  3. rename dataprovider

    @jmthibault79
    jmthibault79 committed Feb 15, 2019
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  4. refactor SliceTests

    @jmthibault79
    jmthibault79 committed Feb 15, 2019
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  5. intializeAlignmentBoundaries and comments

    @jmthibault79
    jmthibault79 committed Feb 15, 2019
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  6. oops

    @jmthibault79
    jmthibault79 committed Feb 15, 2019
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  7. clarify isPlaced() logic

    @jmthibault79
    jmthibault79 committed Feb 15, 2019
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  8. this is why we test lol

    @jmthibault79
    jmthibault79 committed Feb 15, 2019
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  9. more cleanup

    @jmthibault79
    jmthibault79 committed Feb 15, 2019
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Commits on Feb 19, 2019

  1. refactor testBuildStates

    @jmthibault79
    jmthibault79 committed Feb 19, 2019
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  2. Add test_getAlignmentSpan and improve values of test_getAlignmentEnd

    @jmthibault79
    jmthibault79 committed Feb 19, 2019
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  3. combinatoric placedTests

    @jmthibault79
    jmthibault79 committed Feb 19, 2019
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  4. better unmapped consistency for SliceTests

    @jmthibault79
    jmthibault79 committed Feb 19, 2019
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  5. assertSpanAndEnd

    @jmthibault79
    jmthibault79 committed Feb 19, 2019
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  6. alignment span and end tests

    @jmthibault79
    jmthibault79 committed Feb 19, 2019
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Commits on Feb 20, 2019

  1. more comments and test cases

    @jmthibault79
    jmthibault79 committed Feb 20, 2019
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Commits on Feb 21, 2019

  1. Note bug 1301 in comments

    @jmthibault79
    jmthibault79 committed Feb 21, 2019
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