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new Interface VCFIterator extends CloseableIterator<VariantContext> (continued) #1245

Merged
merged 20 commits into from
Dec 19, 2018
Merged

new Interface VCFIterator extends CloseableIterator<VariantContext> (continued) #1245

merged 20 commits into from
Dec 19, 2018

Commits on Mar 30, 2017

  1. VCFIterator

    @lindenb
    lindenb committed Mar 30, 2017
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Commits on Apr 21, 2017

  1. fix #837 (comment)

    @lindenb
    lindenb committed Apr 21, 2017
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Commits on Apr 23, 2017

  1. refactoring after #837 (comment)

    @lindenb
    lindenb committed Apr 23, 2017
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Commits on Apr 26, 2017

  1. fixed after #837 (comment)

    @lindenb
    lindenb committed Apr 26, 2017
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Commits on May 1, 2017

  1. fix after #837 (review)

    @lindenb
    lindenb committed May 1, 2017
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Commits on May 17, 2017

  1. fix #837

    @lindenb
    lindenb committed May 17, 2017
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Commits on Sep 15, 2017

  1. merging with master branch

    @lindenb
    lindenb committed Sep 15, 2017
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  2. fixing #837

    @lindenb
    lindenb committed Sep 15, 2017
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  3. fix countVariants

    @lindenb
    lindenb committed Sep 15, 2017
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  4. adding tests for gzip or bgz

    @lindenb
    lindenb committed Sep 15, 2017
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  5. fix tests for gzip or bgz

    @lindenb
    lindenb committed Sep 15, 2017
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  6. fix tests for gzip or bgz (ioexception)

    @lindenb
    lindenb committed Sep 15, 2017
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  7. fix tests for gzip or bgz (ioexception for file)

    @lindenb
    lindenb committed Sep 15, 2017
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Commits on Sep 17, 2017

  1. handling bcf

    @lindenb
    lindenb committed Sep 17, 2017
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Commits on Sep 19, 2017

  1. fix comments about VCFIterator after #837 (comment)

    @lindenb
    lindenb committed Sep 19, 2017
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  2. fix java doc

    @lindenb
    lindenb committed Sep 19, 2017
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Commits on Sep 21, 2017

  1. corrections #837

    @lindenb
    lindenb committed Sep 21, 2017
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Commits on Dec 18, 2018

  1. Merged master

    @romanzenka
    romanzenka committed Dec 18, 2018
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Commits on Dec 19, 2018

  1. Addressing reviewer comments 

    - better @see syntax
- extra open(String, wrapper) method in VCFIteratorBuilder
- IOTestUtil tests isGZIPInputStream function using a @dataProvider
    @romanzenka
    romanzenka committed Dec 19, 2018
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  2. Reverting non-code formatting changes imposed by IDE

    @romanzenka
    romanzenka committed Dec 19, 2018
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