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CRAM: Immutable Block #1231

Merged
merged 34 commits into from
Dec 10, 2018
Merged

CRAM: Immutable Block #1231

merged 34 commits into from
Dec 10, 2018

Commits on Dec 4, 2018

  1. Immutable Block, RawBlock, and CompressibleBlock

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  2. updates

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  3. public

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  4. better content/type check 

    - see also #1232
    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  5. Content ID comment

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  6. rename Block.readFromInputStream to read() and move down in file

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  7. parameterized

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  8. rm defensive copy

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  9. non-defensive

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  10. Don't store uncompressed data

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  11. Move compressedContent to Block

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  12. better Block subclass hierarchy

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  13. more consistent ExternalDataBlock

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  14. store uncompressed length and check on demand

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  15. rm subclasses besides ExternalDataBlock

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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  16. Change static factory method to constructor

    @jmthibault79
    jmthibault79 committed Dec 4, 2018
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Commits on Dec 5, 2018

  1. Block.createRawFooBlock

    @jmthibault79
    jmthibault79 committed Dec 5, 2018
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  2. renaming in buildSlice

    @jmthibault79
    jmthibault79 committed Dec 5, 2018
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  3. rm unused getByteSize

    @jmthibault79
    jmthibault79 committed Dec 5, 2018
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  4. ContainerIO.readAsCompressionHeader() -> CompressionHeader.readFromBl… 

    …ock()
    @jmthibault79
    jmthibault79 committed Dec 5, 2018
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  5. CompressionHeader.toBlock()

    @jmthibault79
    jmthibault79 committed Dec 5, 2018
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  6. Be more explicit in block type check errors

    @jmthibault79
    jmthibault79 committed Dec 5, 2018
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  7. don't need uncompress again

    @jmthibault79
    jmthibault79 committed Dec 5, 2018
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  8. better names for compressionMethod and contentType

    @jmthibault79
    jmthibault79 committed Dec 5, 2018
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  9. reorder ExternalDataBlock constructor and catch a few more compressio… 

    …nMethod/contentType
    @jmthibault79
    jmthibault79 committed Dec 5, 2018
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  10. new Block constructor specialized for RAW

    @jmthibault79
    jmthibault79 committed Dec 5, 2018
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Commits on Dec 6, 2018

  1. change CompressionHeader public interface to read/write

    @jmthibault79
    jmthibault79 committed Dec 6, 2018
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  2. rename to ExternalBlock, and use plain Block in Slice

    @jmthibault79
    jmthibault79 committed Dec 6, 2018
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Commits on Dec 7, 2018

  1. better exception handling

    @jmthibault79
    jmthibault79 committed Dec 7, 2018
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  2. this can be a simple OutputStream

    @jmthibault79
    jmthibault79 committed Dec 7, 2018
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  3. javadocs

    @jmthibault79
    jmthibault79 committed Dec 7, 2018
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  4. tests can just throw

    @jmthibault79
    jmthibault79 committed Dec 7, 2018
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  5. removed redundant ExternalBlock constructor and streamlined tests

    @jmthibault79
    jmthibault79 committed Dec 7, 2018
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  6. DataProvider smarter

    @jmthibault79
    jmthibault79 committed Dec 7, 2018
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