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Add support for reading and writing splitting BAM index files. #1138

Merged
merged 7 commits into from
Dec 11, 2018
Merged

Add support for reading and writing splitting BAM index files. #1138

merged 7 commits into from
Dec 11, 2018

Commits on Sep 10, 2018

  1. Add support for reading and writing SBI files for BAMs.

    @tomwhite
    tomwhite committed Sep 10, 2018
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  2. Use temp file for storing offsets

    @tomwhite
    tomwhite committed Sep 10, 2018
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  3. Add toString and accessor for the header

    @tomwhite
    tomwhite committed Sep 10, 2018
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Commits on Oct 2, 2018

  1. Address review feedback.

    @tomwhite
    tomwhite committed Oct 2, 2018
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Commits on Oct 16, 2018

  1. Use Java NIO File API.

    @tomwhite
    tomwhite committed Oct 16, 2018
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  2. Make variables final where possible.

    @tomwhite
    tomwhite committed Oct 16, 2018
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Commits on Oct 23, 2018

  1. Address more review feedback

    @tomwhite
    tomwhite committed Oct 23, 2018
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