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BlockCompressedIndexedFastaSequenceFile checks for a gzi even if an index is passed in. #1290

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lbergelson opened this issue Feb 19, 2019 · 0 comments
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BlockCompressedIndexedFastaSequenceFile checks for a gzi even if an index is passed in. #1290

lbergelson opened this issue Feb 19, 2019 · 0 comments

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@lbergelson
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It looks like new BlockCompressedIndexedFastaSequenceFile( Path, FastaSequenceIndex, GZIIndex) inappropriately Files.exists(GZIIndex.resolveIndexNameForBgzipFile(path) even though the GZIIndex has been preloaded and passed in as part of canCreateBlockCompresedIndexedFastaSequence
@lbergelson lbergelson mentioned this issue Feb 19, 2019
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lbergelson added a commit that referenced this issue Feb 28, 2019
@lbergelson
Fix bug when loading indexed bgzip fasta file.
aa62177 
* There was a bug that prevented loading an indexed bgzip fasta file if the index location was specified but wasn't next to the fasta in the file system.
* Fixes #1290
@lbergelson lbergelson mentioned this issue Feb 28, 2019
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lbergelson added a commit that referenced this issue Mar 4, 2019
@lbergelson
Fix bug when loading indexed bgzip fasta file. (#1311)
7b3c7a6 
* There was a bug that prevented loading an indexed bgzip fasta file if the index location was specified but wasn't next to the fasta in the file system.
* Fixes #1290
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