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- added another testcase
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yfarjoun committed Oct 27, 2016
1 parent 35fcd18 commit b74b332
Showing 1 changed file with 11 additions and 11 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -40,15 +40,16 @@ public class SAMSequenceDictionaryExtractorTest {
@DataProvider(name = "testExtractDictionaries")
public Object[][] dictionaries() {
return new Object[][]{
new Object[]{"test1_comp.interval_list", "test1.dict"},
new Object[]{"test1.vcf", "test1.dict"},
new Object[]{"test1.dict", "test1.dict"},
new Object[]{"empty.interval_list", "test1.dict"},
new Object[]{"Homo_sapiens_assembly18.trimmed.fasta", "Homo_sapiens_assembly18.trimmed.dict"},
new Object[]{"test2_comp.interval_list", "Homo_sapiens_assembly18.trimmed.dict"},
new Object[]{"ScreenSamReads.100.input.sam", "test3_comp.interval_list"},
new Object[]{"ScreenSamReads.100.input.bam", "test3_comp.interval_list"},
new Object[]{"ScreenSamReads.100.input.cram", "test3_comp.interval_list"},
{"test1_comp.interval_list", "test1.dict"},
{"test1.vcf", "test1.dict"},
{"test1.dict", "test1.dict"},
{"empty.interval_list", "test1.dict"},
{"Homo_sapiens_assembly18.trimmed.fasta", "Homo_sapiens_assembly18.trimmed.dict"},
{"test2_comp.interval_list", "Homo_sapiens_assembly18.trimmed.dict"},
{"ScreenSamReads.100.input.sam", "test3_comp.interval_list"},
{"ScreenSamReads.100.input.bam", "test3_comp.interval_list"},
{"ScreenSamReads.100.input.cram", "test3_comp.interval_list"},
{"ScreenSamReads.100.input.cram", "ScreenSamReads.100.input.dict"}
};
}

Expand All @@ -59,8 +60,7 @@ public void testExtractDictionary(final String dictSource, final String dictExpe
final SAMSequenceDictionary dict1 = SAMSequenceDictionaryExtractor.extractDictionary(dictSourceFile);
final SAMSequenceDictionary dict2 = SAMSequenceDictionaryExtractor.extractDictionary(dictExpectedFile);

Assert.assertTrue(SequenceUtil.areSequenceDictionariesEqual(dict1,
dict2));
Assert.assertTrue(SequenceUtil.areSequenceDictionariesEqual(dict1, dict2));
Assert.assertTrue(dict1.md5().equals(dict2.md5()));
}
}

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