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Describe the bug
My colleague @Rebecza is trying to download a single-cell ATAC-seq dataset and uses pysradb to get some metadata (seq2science), and managed to find a JsonDecodeError 🐛 . It's a list of approx 750 ENA samples, the strange this is the JsonDecodeError appears with the full list, but when split up in smaller lists it seems to work...
Thanks for creating a reproducible example. My guess is a long list of ids is causing SRA to timeout. I would suggest processing it in batches just the way you have done while I figure out if it can indeed be fixed.
Describe the bug
My colleague @Rebecza is trying to download a single-cell ATAC-seq dataset and uses pysradb to get some metadata (seq2science), and managed to find a JsonDecodeError 🐛 . It's a list of approx 750 ENA samples, the strange this is the JsonDecodeError appears with the full list, but when split up in smaller lists it seems to work...
To Reproduce
I put it on colab, not sure if the link is working
https://colab.research.google.com/drive/1bC2WiA63JJnWYZew0pk6iovk537vQzaU?usp=sharing
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