1.2.0 #110
Merged
1.2.0 #110
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
`facet_grid(facets=...)` doesnt exist any more.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
1.2.0 (24.05.2024)
Added inbuilt orthology conversion functions to convert between species in the ligand-receptor resources (addressing The mouse resource are missing important interactions that should be possible to convert #76)
These include:
li.rs.get_hcop_orthologyto obtain a dataframe of orthologs from HCOP,li.rs.translate_columnto translate a single column in a dataframe, andli.rs.translate_resourceas a simple wrapper from the latter function to be applied on dataframes.Merged KeyError: None when using top_n parameter in li.pl.dotplot #109 to address a backward compatibility issue with plotnine's facets.
Updated MOFAcell & MOFAtalk tutorials, by making some parameters a bit more explicit (Clarify LIANA + MOFA vignette #102), and using decoupler's association plot to do ANOVA + plot metadata associations.
The mean rank returned by
rank_aggregatewhenaggregate_metod= 'mean' is now normalized by the total number of interactions.Fixed a minor logic issue when calculating analytical p-values for Moran's R