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When loading an actual tree sometimes extraneous deps were not being properly marked as so, since they were not really marked as extraneous at the moment of reify, so in order to be strictly correct we need to recalculate deps at load-actual in order to make sure extraneous deps are properly marked as such. Related to: npm/cli#2554 PR-URL: npm#289 Credit: @ruyadorno Close: npm#289 Reviewed-by: @isaacs
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