jun2015lgl -- Support scripts for "Evidence for Retrovirus Expression in LGL Leukemia"

Aug/1/2015, Bob Harris (rsharris at bx dot psu dot edu)

Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
chrom_avg		chrom_avg
encodachrom		encodachrom
LICENSE		LICENSE
README.md		README.md
S1.called_insertions.sh		S1.called_insertions.sh
S1_LGL_MP.discordant_mates_dense.sh		S1_LGL_MP.discordant_mates_dense.sh
S1_LGL_MP.insert_depth.normal.sh		S1_LGL_MP.insert_depth.normal.sh
S1_LGL_MP.insert_depth.short.sh		S1_LGL_MP.insert_depth.short.sh
S1_LGL_MP.insert_depth_dense.sh		S1_LGL_MP.insert_depth_dense.sh
S1_LGL_MP.insert_depth_sparse.sh		S1_LGL_MP.insert_depth_sparse.sh
S1_LGL_MP.insert_length.sh		S1_LGL_MP.insert_length.sh
S1_LGL_MP.insert_length_sparse.sh		S1_LGL_MP.insert_length_sparse.sh
S1_LGL_MP.insert_length_sparse_or_normal_inserts_sparse.sh		S1_LGL_MP.insert_length_sparse_or_normal_inserts_sparse.sh
S1_LGL_MP.short_or_discordant.sh		S1_LGL_MP.short_or_discordant.sh
close_intervals.py		close_intervals.py
collect_tags.py		collect_tags.py
control.dat		control.dat
create_script_call_insertions_discordant.py		create_script_call_insertions_discordant.py
create_script_depth.py		create_script_depth.py
create_script_discordant_mates_dense.py		create_script_discordant_mates_dense.py
create_script_insert_depth.py		create_script_insert_depth.py
create_script_insert_depth_dense.py		create_script_insert_depth_dense.py
create_script_insert_depth_sparse.py		create_script_insert_depth_sparse.py
create_script_insert_length.py		create_script_insert_length.py
create_script_insert_length_sparse.py		create_script_insert_length_sparse.py
create_script_insert_length_sparse_or_normal_inserts_sparse.py		create_script_insert_length_sparse_or_normal_inserts_sparse.py
create_script_short_or_discordant.py		create_script_short_or_discordant.py
fill_genomic_interval_gaps.py		fill_genomic_interval_gaps.py
filtered_sam_to_intervals.py		filtered_sam_to_intervals.py
intervals_to_ucsc_catalog.py		intervals_to_ucsc_catalog.py
keep_first.py		keep_first.py
make_bigwig_info.py		make_bigwig_info.py
make_bwa_jobs.py		make_bwa_jobs.py
proximal_feature_intervals.py		proximal_feature_intervals.py
sam_reader.py		sam_reader.py

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