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rrwick committed Feb 16, 2024
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Expand Up @@ -272,9 +272,9 @@ For more information on how error models work, see [this page on the wiki](https
### QScore model

The possible values for the `--qscore_model` argument are:
* `nanopore2023`: a model trained on Nanopore reads from 2023 (the default)
* `nanopore2020`: a model trained on Nanopore reads from 2020
* `nanopore2018`: a model trained on Nanopore reads from 2018
* `nanopore2023`: a model trained on ONT R10.4.1 reads from 2023 (the default)
* `nanopore2020`: a model trained on ONT R9.4.1 reads from 2020
* `nanopore2018`: a model trained on ONT R9.4/R9.4.1 reads from 2018
* `pacbio2016`: a model trained on PacBio RS II reads from 2016
* `pacbio2021`: a model trained on PacBio HiFi reads from 2021
* `random`: a model where qscores are meaningless and give no indication of read/base quality
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