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DCM2NIIXFSLIB changes #800

Merged
merged 1 commit into from
Feb 28, 2024
Merged

DCM2NIIXFSLIB changes #800

merged 1 commit into from
Feb 28, 2024

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yhuang43
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  • dcm2niix_fswrapper: allow subset of dcm2niix options to be set through mri_convert
  • dcmListDump(): use environment variable MGH_DCMUNPACK_IMAGELIST to communicate with dcm2niix where to output imagelist.dat
  • retrieve/output 'pulseSequenceDetails (tSequenceFileName)' from DICOM CSA header (0029,1020)

@yhuang43
DCM2NIIXFSLIB changes
79bcd4c 
  - dcm2niix_fswrapper: allow subset of dcm2niix options to be set through mri_convert
  - dcmListDump(): use environment variable MGH_DCMUNPACK_IMAGELIST to communicate with dcm2niix where to output imagelist.dat
  - retrieve/output 'pulseSequenceDetails (tSequenceFileName)' from DICOM CSA header (0029,1020)
@mharms
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mharms commented Feb 28, 2024

There already is a json entry for PulseSequenceDetails. Does this PR change where that info is coming from?

@yhuang43
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The information is retrieved the same way. I'm adding it to MRIFSSTRUCT so Freesurfer will have the information.

@neurolabusc neurolabusc merged commit bca228c into rordenlab:development Feb 28, 2024
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@yhuang43 @mharms @neurolabusc