DESCRIPTION

Type: Package
Title: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis
Version: 1.21.2
Authors@R: person("Johannes", "Griss", email = "johannes.griss@meduniwien.ac.at", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2206-9511"))
Description: The ReactomeGSA packages uses Reactome's online analysis service to perform a multi-omics
    gene set analysis. The main advantage of this package is, that the retrieved results can be 
    visualized using REACTOME's powerful webapplication.
    Since Reactome's analysis service also uses R to perfrom the actual gene set
    analysis you will get similar results when using the same packages (such as limma and edgeR) locally.
    Therefore, if you only require a gene set analysis, different packages are more suited.
License: MIT + file LICENSE
URL: https://github.com/reactome/ReactomeGSA
BugReports: https://github.com/reactome/ReactomeGSA/issues
Imports: 
    Biobase,
    BiocSingular,
    dplyr,
    ggplot2,
    gplots,
    httr,
    igraph,
    jsonlite,
    methods,
    progress,
    RColorBrewer,
    SummarizedExperiment,
    tidyr
Suggests: 
    devtools,
    knitr,
    ReactomeGSA.data,
    rmarkdown,
    scater,
    scran,
    scRNAseq,
    scuttle,
    Seurat (>= 3.0),
    SingleCellExperiment,
    testthat
VignetteBuilder: 
    knitr
biocViews: GeneSetEnrichment, Proteomics, Transcriptomics, SystemsBiology,
    GeneExpression, Reactome
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.2