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Add support for Python 3.12, update to umap-learn==0.5.6 #6060

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merged 5 commits into from
Sep 12, 2024
+44 −35
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Add support for Python 3.12, update to umap-learn==0.5.6 #6060

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dc056a0
Add support for Python 3.12.
jameslamb Sep 4, 2024
90c5da8
update umap-learn (0.5.3 -> 0.5.6)
jameslamb Sep 5, 2024
2c863db
Merge branch 'branch-24.10' into python-3.12
jameslamb Sep 9, 2024
333c5ab
Merge branch 'branch-24.10' into python-3.12
bdice Sep 11, 2024
d019dec
Add setuptools dependency for dask-glm.
bdice Sep 11, 2024
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12 changes: 6 additions & 6 deletions .github/workflows/build.yaml
View file
Original file line number Diff line number Diff line change
@@ -28,7 +28,7 @@ concurrency:
jobs:
cpp-build:
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-build.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-build.yaml@python-3.12
with:
build_type: ${{ inputs.build_type || 'branch' }}
branch: ${{ inputs.branch }}
@@ -38,7 +38,7 @@ jobs:
if: github.ref_type == 'branch'
needs: [python-build]
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/custom-job.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/custom-job.yaml@python-3.12
with:
arch: "amd64"
branch: ${{ inputs.branch }}
@@ -51,7 +51,7 @@ jobs:
python-build:
needs: [cpp-build]
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-python-build.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-python-build.yaml@python-3.12
with:
build_type: ${{ inputs.build_type || 'branch' }}
branch: ${{ inputs.branch }}
@@ -60,15 +60,15 @@ jobs:
upload-conda:
needs: [cpp-build, python-build]
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-upload-packages.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-upload-packages.yaml@python-3.12
with:
build_type: ${{ inputs.build_type || 'branch' }}
branch: ${{ inputs.branch }}
date: ${{ inputs.date }}
sha: ${{ inputs.sha }}
wheel-build-cuml:
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/wheels-build.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/wheels-build.yaml@python-3.12
with:
build_type: ${{ inputs.build_type || 'branch' }}
branch: ${{ inputs.branch }}
@@ -84,7 +84,7 @@ jobs:
wheel-publish-cuml:
needs: wheel-build-cuml
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/wheels-publish.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/wheels-publish.yaml@python-3.12
with:
build_type: ${{ inputs.build_type || 'branch' }}
branch: ${{ inputs.branch }}
30 changes: 15 additions & 15 deletions .github/workflows/pr.yaml
View file
Original file line number Diff line number Diff line change
@@ -26,18 +26,18 @@ jobs:
- wheel-tests-cuml
- devcontainer
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/pr-builder.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/pr-builder.yaml@python-3.12
checks:
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/checks.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/checks.yaml@python-3.12
with:
enable_check_generated_files: false
ignored_pr_jobs: >-
optional-job-conda-python-tests-cudf-pandas-integration
clang-tidy:
needs: checks
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/custom-job.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/custom-job.yaml@python-3.12
with:
build_type: pull-request
node_type: "cpu8"
@@ -47,55 +47,55 @@ jobs:
conda-cpp-build:
needs: checks
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-build.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-build.yaml@python-3.12
with:
build_type: pull-request
conda-cpp-tests:
needs: conda-cpp-build
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-tests.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-tests.yaml@python-3.12
with:
build_type: pull-request
conda-cpp-checks:
needs: conda-cpp-build
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-post-build-checks.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-post-build-checks.yaml@python-3.12
with:
build_type: pull-request
enable_check_symbols: true
symbol_exclusions: raft_cutlass
conda-python-build:
needs: conda-cpp-build
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-python-build.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-python-build.yaml@python-3.12
with:
build_type: pull-request
conda-python-tests-singlegpu:
needs: conda-python-build
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-python-tests.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-python-tests.yaml@python-3.12
with:
build_type: pull-request
script: "ci/test_python_singlegpu.sh"
optional-job-conda-python-tests-cudf-pandas-integration:
needs: conda-python-build
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-python-tests.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-python-tests.yaml@python-3.12
with:
matrix_filter: map(select(.ARCH == "amd64"))
build_type: pull-request
script: "ci/test_python_integration.sh"
conda-python-tests-dask:
needs: conda-python-build
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-python-tests.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-python-tests.yaml@python-3.12
with:
build_type: pull-request
script: "ci/test_python_dask.sh"
conda-notebook-tests:
needs: conda-python-build
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/custom-job.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/custom-job.yaml@python-3.12
with:
build_type: pull-request
node_type: "gpu-v100-latest-1"
@@ -105,7 +105,7 @@ jobs:
docs-build:
needs: conda-python-build
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/custom-job.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/custom-job.yaml@python-3.12
with:
build_type: pull-request
node_type: "gpu-v100-latest-1"
@@ -115,7 +115,7 @@ jobs:
wheel-build-cuml:
needs: checks
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/wheels-build.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/wheels-build.yaml@python-3.12
with:
build_type: pull-request
script: ci/build_wheel.sh
@@ -125,13 +125,13 @@ jobs:
wheel-tests-cuml:
needs: wheel-build-cuml
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/wheels-test.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/wheels-test.yaml@python-3.12
with:
build_type: pull-request
script: ci/test_wheel.sh
devcontainer:
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/build-in-devcontainer.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/build-in-devcontainer.yaml@python-3.12
with:
arch: '["amd64"]'
cuda: '["12.5"]'
10 changes: 5 additions & 5 deletions .github/workflows/test.yaml
View file
Original file line number Diff line number Diff line change
@@ -16,7 +16,7 @@ on:
jobs:
conda-cpp-checks:
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-post-build-checks.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-post-build-checks.yaml@python-3.12
with:
build_type: nightly
branch: ${{ inputs.branch }}
@@ -26,15 +26,15 @@ jobs:
symbol_exclusions: raft_cutlass
conda-cpp-tests:
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-tests.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-cpp-tests.yaml@python-3.12
with:
build_type: nightly
branch: ${{ inputs.branch }}
date: ${{ inputs.date }}
sha: ${{ inputs.sha }}
conda-python-tests-singlegpu:
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-python-tests.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-python-tests.yaml@python-3.12
with:
build_type: nightly
branch: ${{ inputs.branch }}
@@ -43,7 +43,7 @@ jobs:
script: "ci/test_python_singlegpu.sh"
conda-python-tests-dask:
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/conda-python-tests.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/conda-python-tests.yaml@python-3.12
with:
build_type: nightly
branch: ${{ inputs.branch }}
@@ -52,7 +52,7 @@ jobs:
script: "ci/test_python_dask.sh"
wheel-tests-cuml:
secrets: inherit
uses: rapidsai/shared-workflows/.github/workflows/wheels-test.yaml@branch-24.10
uses: rapidsai/shared-workflows/.github/workflows/wheels-test.yaml@python-3.12
with:
build_type: nightly
branch: ${{ inputs.branch }}
2 changes: 1 addition & 1 deletion BUILD.md
View file
Original file line number Diff line number Diff line change
@@ -18,7 +18,7 @@ To install cuML from source, ensure the following dependencies are met:
It is recommended to use conda for environment/package management. If doing so, development environment .yaml files are located in `conda/environments/all_*.yaml`. These files contains most of the dependencies mentioned above (notable exceptions are `gcc` and `zlib`). To create a development environment named `cuml_dev`, you can use the follow commands:

```bash
conda create -n cuml_dev python=3.11
conda create -n cuml_dev python=3.12
conda env update -n cuml_dev --file=conda/environments/all_cuda-118_arch-x86_64.yaml
conda activate cuml_dev
```
5 changes: 3 additions & 2 deletions conda/environments/all_cuda-118_arch-x86_64.yaml
View file
Original file line number Diff line number Diff line change
@@ -58,7 +58,7 @@ dependencies:
- pytest-cov
- pytest-xdist
- pytest==7.*
- python>=3.10,<3.12
- python>=3.10,<3.13
- raft-dask==24.10.*,>=0.0.0a0
- rapids-build-backend>=0.3.0,<0.4.0.dev0
- rapids-dask-dependency==24.10.*,>=0.0.0a0
@@ -68,13 +68,14 @@ dependencies:
- scikit-learn==1.5
- scipy>=1.8.0
- seaborn
- setuptools
- sphinx-copybutton
- sphinx-markdown-tables
- sphinx<6
- statsmodels
- sysroot_linux-64==2.17
- treelite==4.3.0
- umap-learn==0.5.3
- umap-learn==0.5.6
- pip:
- dask-glm==0.3.0
name: all_cuda-118_arch-x86_64
5 changes: 3 additions & 2 deletions conda/environments/all_cuda-125_arch-x86_64.yaml
View file
Original file line number Diff line number Diff line change
@@ -54,7 +54,7 @@ dependencies:
- pytest-cov
- pytest-xdist
- pytest==7.*
- python>=3.10,<3.12
- python>=3.10,<3.13
- raft-dask==24.10.*,>=0.0.0a0
- rapids-build-backend>=0.3.0,<0.4.0.dev0
- rapids-dask-dependency==24.10.*,>=0.0.0a0
@@ -64,13 +64,14 @@ dependencies:
- scikit-learn==1.5
- scipy>=1.8.0
- seaborn
- setuptools
- sphinx-copybutton
- sphinx-markdown-tables
- sphinx<6
- statsmodels
- sysroot_linux-64==2.17
- treelite==4.3.0
- umap-learn==0.5.3
- umap-learn==0.5.6
- pip:
- dask-glm==0.3.0
name: all_cuda-125_arch-x86_64
2 changes: 1 addition & 1 deletion conda/recipes/cuml-cpu/meta.yaml
View file
Original file line number Diff line number Diff line change
@@ -35,7 +35,7 @@ requirements:
- pandas
- scikit-learn=1.2
- hdbscan>=0.8.38,<0.8.39
- umap-learn=0.5.3
- umap-learn=0.5.6
- nvtx

tests: # [linux64]
9 changes: 7 additions & 2 deletions dependencies.yaml
View file
Original file line number Diff line number Diff line change
@@ -472,8 +472,12 @@ dependencies:
packages:
- python=3.11
- matrix:
py: "3.12"
packages:
- python>=3.10,<3.12
- python=3.12
- matrix:
packages:
- python>=3.10,<3.13
test_libcuml:
common:
- output_types: conda
@@ -509,8 +513,9 @@ dependencies:
- seaborn
- *scikit_learn
- statsmodels
- umap-learn==0.5.3
- umap-learn==0.5.6
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umap-learn==0.5.3 does not have Python 3.12 packages on conda-forge, resulting in these build errors:

  LibMambaUnsatisfiableError: Encountered problems while solving:
    - package umap-learn-0.5.3-py310hff52083_0 requires python_abi 3.10.* *_cp310, but none of the providers can be installed
  
  Could not solve for environment specs
  The following packages are incompatible
  ...
  └─ umap-learn 0.5.3  is not installable because there are no viable options
     ├─ umap-learn 0.5.3 would require
     │  └─ python_abi 3.10.* *_cp310, which conflicts with any installable versions previously reported;
     ├─ umap-learn 0.5.3 would require
     │  └─ python_abi 3.7.* *_cp37m, which conflicts with any installable versions previously reported;
     ├─ umap-learn 0.5.3 would require
     │  └─ python_abi 3.8.* *_cp38, which conflicts with any installable versions previously reported;
     ├─ umap-learn 0.5.3 would require
     │  └─ python_abi 3.9.* *_cp39, which conflicts with any installable versions previously reported;
     └─ umap-learn 0.5.3 would require
        └─ python_abi 3.11.* *_cp311, which conflicts with any installable versions previously reported.

(build link)

Proposing updating to the latest version (0.5.6).

- pynndescent
- setuptools # Needed on Python 3.12 for dask-glm, which requires pkg_resources but Python 3.12 doesn't have setuptools by default
- output_types: conda
packages:
- pip
4 changes: 3 additions & 1 deletion python/cuml/pyproject.toml
View file
Original file line number Diff line number Diff line change
@@ -105,6 +105,7 @@ classifiers = [
"Programming Language :: Python",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
]

[project.optional-dependencies]
@@ -124,8 +125,9 @@ test = [
"pytest==7.*",
"scikit-learn==1.5",
"seaborn",
"setuptools",
"statsmodels",
"umap-learn==0.5.3",
"umap-learn==0.5.6",
] # This list was generated by `rapids-dependency-file-generator`. To make changes, edit ../../dependencies.yaml and run `rapids-dependency-file-generator`.

[project.urls]