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For sbpack 2020.10.5 packing where the run: points to a url fails:
sbpack v2020.10.05 Upload CWL apps to any Seven Bridges powered platform (c) Seven Bridges 2020 Traceback (most recent call last): File "/Users/srispin/.local/bin/sbpack", line 8, in <module> sys.exit(main()) File "/Users/srispin/.local/pipx/venvs/sbpack/lib/python3.8/site-packages/sbpack/pack.py", line 356, in main cwl = pack(cwl_path, filter_non_sbg_tags=args.filter_non_sbg_tags) File "/Users/srispin/.local/pipx/venvs/sbpack/lib/python3.8/site-packages/sbpack/pack.py", line 318, in pack cwl = pack_process(cwl, full_url) File "/Users/srispin/.local/pipx/venvs/sbpack/lib/python3.8/site-packages/sbpack/pack.py", line 65, in pack_process cwl = resolve_steps(cwl, base_url, user_defined_types) File "/Users/srispin/.local/pipx/venvs/sbpack/lib/python3.8/site-packages/sbpack/pack.py", line 201, in resolve_steps v["run"], new_base_url = lib.load_linked_file( File "/Users/srispin/.local/pipx/venvs/sbpack/lib/python3.8/site-packages/sbpack/lib.py", line 132, in load_linked_file new_url = resolved_path(base_url, link) File "/Users/srispin/.local/pipx/venvs/sbpack/lib/python3.8/site-packages/sbpack/lib.py", line 125, in resolved_path new_url = urllib.parse.ParseResult(link_url) TypeError: __new__() missing 5 required positional arguments: 'netloc', 'path', 'params', 'query', and 'fragment'
Where as, in an older version I get no issues (2020.6.18) sbpack cavatica mwonge/mwtest/graphene-sage-hg19 graphene-sage.hg19.cwl
sbpack cavatica mwonge/mwtest/graphene-sage-hg19 graphene-sage.hg19.cwl
The text was updated successfully, but these errors were encountered:
cope with URLs in run field
3182f1a
Fixes rabix#12
Successfully merging a pull request may close this issue.
For sbpack 2020.10.5 packing where the run: points to a url fails:
Where as, in an older version I get no issues (2020.6.18)
sbpack cavatica mwonge/mwtest/graphene-sage-hg19 graphene-sage.hg19.cwl
The text was updated successfully, but these errors were encountered: