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Mitigation experiment#415

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coruscating merged 103 commits into
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gadial:readout_mitigation_experiment
Jan 13, 2022
Merged

Mitigation experiment#415
coruscating merged 103 commits into
qiskit-community:mainfrom
gadial:readout_mitigation_experiment

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@gadial
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@gadial gadial commented Oct 4, 2021

Summary

Details and comments

@ShellyGarion ShellyGarion self-requested a review October 5, 2021 07:57
Comment thread qiskit_experiments/library/mitigation/__init__.py Outdated
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  • Mitigation experiment should return a Mitigator object and not only the matrices, the matrices are only part of the Mitigator object
  • Perhaps there should be only one experiment, and use a method parameter (complete, tensored, CTMP, M3,...)

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eggerdj commented Oct 8, 2021

Can we also have a corresponding data processing node? It seems like one would want to use the result from readout error mitigation in a data processing chain.

@ShellyGarion ShellyGarion linked an issue Nov 15, 2021 that may be closed by this pull request
gadial and others added 15 commits December 7, 2021 10:22
* Slightly changing the way interleaved element is passed and used

* Linting

* Linting

* Linting
* Allow splitting of jobs for all backends

Allows splitting experiments containing more circuits than can be executed at once into multiple jobs for legacy backends and 3rd party backends that don't support job splitting automatically.

* Update requirements.txt mpl req

* Add test

Also had to fix bug in FakeJob where the job id of the result and job didn't match which would lead to errors in the number of added jobs.

* Fixup

* Fix missing callback

Fix missing callback call when all added data is non-job data

* Add lock to add_data

* Fix type hint for run_analysis

* Update releasenotes/notes/job-splitting-775dc9aed9cf20c2.yaml

Co-authored-by: Matthew Treinish <mtreinish@kortar.org>

Co-authored-by: Matthew Treinish <mtreinish@kortar.org>
* * FineAmp can now run without a schedule.

* * Added test on gates.

* * Made fine drag work without schedules.

* Update qiskit_experiments/library/calibration/fine_drag.py

* * Docstring

* Update qiskit_experiments/library/calibration/fine_drag.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/calibration/fine_drag.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

Co-authored-by: Will Shanks <wshaos@posteo.net>
Setting `sigma=None` for curve_fit would raise an error from trying to call `np.isnan(None)`. This adds a check that sigma is not None first.
* add pre-processing to curve fit

* black&lint

* add reno

* rb notebook update

* update averaging method with shot number

* revert RB analysis

* update reno

* fix test

* revert rb notebook

* fix documentation from comments

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>

* add shots to data sort

* fix bug

* black

* fix bug

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>
Co-authored-by: Will Shanks <wshaos@posteo.net>
Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>
Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>
Co-authored-by: Kevin Tian <kevin.tian@ibm.com>
Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>
* * Terra bump

* * Constraints.

* * Delete constraints.
…#433)

* Make verify_headers verify files in the test folder

* made verify_headers nicer

* lint

* update tox.ini to run black and lint also for the tools folder
Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>
@gadial gadial changed the title [WIP] Mitigation experiment Mitigation experiment Jan 10, 2022
@ShellyGarion ShellyGarion self-requested a review January 11, 2022 14:55
@coruscating coruscating merged commit db3962c into qiskit-community:main Jan 13, 2022
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This review is coming to late since it was prematurely merged, but I strongly suggest you open a new PR to address these comments. While the basic implementation code looks fine this is completely missing API docs. All new experiments added to this module should include detailed API docs so someone reading them can know what an experiment does, how to use it, what its analysis will return, without having to look at the source code, and ideally without previously being familiar with the experiment.

Wrt API docs the name and descriptions of the experiments are incorrect. There is no mitigation being performed by these experiments, since they are characterization experiments for readout error. The mitigator object is the returned analysis result so the API docs should say something to that effect (eg characterizes local readout errors on qubit measurements. readout errors are defined as classical error on returned bitstrings blah blah... The returned analysis results is a ReadoutMitigator object which contains readout errors and can be used to apply readout error mitigation to measured counts etc).

For clarity I would also suggest just having two explicit experiments LocalReadoutError and CorrelatedReadoutError rather than a single one. Then the API docs can state exactly which characterization circuits are prepared in each case, and it is how they are used in practice anyway.



class ReadoutMitigationExperiment(BaseExperiment):
"""Class for readout mitigation experiments"""
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This class is missing API documentation. It should have some description of what the experiment is and a reference to relevant paper and analysis class ie like this

class ReadoutMitigationExperiment(BaseExperiment):
"""Class for readout mitigation experiments"""

METHOD_LOCAL = "local"
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Why do these need to be stored as a class variable? You can just put the value in the method and allowed values should be listed in the API docs. If you make two separate experiment classes you also dont need it

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I agree that making two separate experiments makes things much simpler; this is also addressed in #611

QiskitError: if the given mitigation method is not recoginzed

Additional info:
The currently supported mitigation methods are:
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Suggested change
The currently supported mitigation methods are:
Supported mitigation methods are:

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Though you can just remove this by making two experiments and putting all the relevent info into the experiments API docs

Additional info:
The currently supported mitigation methods are:
* "local": each qubit is mitigated by itself; this is the default method,
and assumes readout errors are independent for each qubits
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This is not indented correctly

Suggested change
and assumes readout errors are independent for each qubits
and assumes readout errors are independent for each qubits

* "local": each qubit is mitigated by itself; this is the default method,
and assumes readout errors are independent for each qubits
* "correlated": All the qubits are mitigated together; this results in an exponentially
large mitigation matrix and so is useable only for a small number of qubits,
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Same here


class CorrelatedMitigationAnalysis(BaseAnalysis):
"""
Measurement correction analysis for a full calibration
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Ideally this should be more descriptive. On what the analysis is so someone not familiar with the experiment can read it and know what it does.

In this case it constructs a readout error assignment matrix for possibly correlated N-qubit measurment outcomes (and you can put in an equation). It should also mention what hte analysis results returned are (in this case the CorrelatedMitigator class and include a link to the terra API docs for that class).

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Done


class LocalMitigationAnalysis(BaseAnalysis):
"""
Measurement correction analysis for a full calibration
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Same here. This is missing proper API docs explaining what it does, what it returns, and link to the mitigator class returns.

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Done

matrices = self._generate_matrices(data)
result_mitigator = LocalReadoutMitigator(matrices, qubits=qubits)
analysis_results = [AnalysisResultData("Local Readout Mitigator", result_mitigator)]
if self.options.plot:
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Since these classes produce a figure that should also be mentioned in the API docs

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Done

from .randomized_benchmarking import StandardRB, InterleavedRB
from .tomography import StateTomography, ProcessTomography
from .quantum_volume import QuantumVolume
from .mitigation import ReadoutMitigationExperiment
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The readout error experiments needsto be added to the doc string of this init file to show up in the API docs

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Where do they fit in? Characterization experiments?


"""
===============================================================================================
Readout Mitigation Experiments (:mod:`qiskit_experiments.library.mitigation`)
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I don't think this show up anywhere in the build docs because its not included in any other init files. The library section is where users see a list of experiments in the API docs.

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Fixed

@gadial
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gadial commented Jan 16, 2022

Thanks @chriseclectic , I've opened a new PR to address those issues:

#611

nkanazawa1989 added a commit to nkanazawa1989/qiskit-experiments that referenced this pull request Jan 19, 2022
* Mitigation experiment initial commit

* Added mitigation analysis

* Small fixes to ensure figures are generated

* Linting

* Adding tensored mitigation as parallel experiment

* Changing method into class

* Bug fixes

* Restructuring to avoid reliance on composite experiment, and simplifying tensored experiment

* Refactor mitigation experiment to have two experiment classes

* RB Interleaved element fix (qiskit-community#399)

* Slightly changing the way interleaved element is passed and used

* Linting

* Linting

* Linting

* Allow splitting of jobs for all backends (qiskit-community#402)

* Allow splitting of jobs for all backends

Allows splitting experiments containing more circuits than can be executed at once into multiple jobs for legacy backends and 3rd party backends that don't support job splitting automatically.

* Update requirements.txt mpl req

* Add test

Also had to fix bug in FakeJob where the job id of the result and job didn't match which would lead to errors in the number of added jobs.

* Fixup

* Fix missing callback

Fix missing callback call when all added data is non-job data

* Add lock to add_data

* Fix type hint for run_analysis

* Update releasenotes/notes/job-splitting-775dc9aed9cf20c2.yaml

Co-authored-by: Matthew Treinish <mtreinish@kortar.org>

Co-authored-by: Matthew Treinish <mtreinish@kortar.org>

* FineAmp without schedules (qiskit-community#420)

* * FineAmp can now run without a schedule.

* * Added test on gates.

* * Made fine drag work without schedules.

* Update qiskit_experiments/library/calibration/fine_drag.py

* * Docstring

* Update qiskit_experiments/library/calibration/fine_drag.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/calibration/fine_drag.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Fix bug in curve_fit for sigma=None (qiskit-community#422)

Setting `sigma=None` for curve_fit would raise an error from trying to call `np.isnan(None)`. This adds a check that sigma is not None first.

* Fix bug in DbExperimentData._retrieve_data (qiskit-community#421)

* Add analysis callback to ExperimentData (qiskit-community#407)

* Add default pre-processing to curve analysis (qiskit-community#409)

* add pre-processing to curve fit

* black&lint

* add reno

* rb notebook update

* update averaging method with shot number

* revert RB analysis

* update reno

* fix test

* revert rb notebook

* fix documentation from comments

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>

* add shots to data sort

* fix bug

* black

* fix bug

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>

* Improve calibration experiments (qiskit-community#251)

Co-authored-by: Will Shanks <wshaos@posteo.net>
Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>
Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>

* english (qiskit-community#429)

* PR for saving and loading composite experiments (qiskit-community#364)

Co-authored-by: Kevin Tian <kevin.tian@ibm.com>
Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>

* Bump terra to the most recent master (qiskit-community#426)

* * Terra bump

* * Constraints.

* * Delete constraints.

* Make verify_headers verify files in the test folder (qiskit-community#433)

* Make verify_headers verify files in the test folder

* made verify_headers nicer

* lint

* update tox.ini to run black and lint also for the tools folder

* Fix bug with ExperimentData.load (qiskit-community#423)

* * Fix issue 430 (qiskit-community#434)

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>

* * Added loading bug fix and corresponding test. (qiskit-community#444)

* * Added tearDown. (qiskit-community#449)

* Adjust tomography doc strings to automatic template (qiskit-community#375)

* tomography autotemplate doc

* fix lint errors

* fix indentation

* add blank lines

* small doc change

* Update qpt_analysis.py

* Update qpt_experiment.py

* Update qst_analysis.py

* lint docs fix

* misc

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>
Co-authored-by: knzwnao <knzwnao@jp.ibm.com>

* Drag fit instability (qiskit-community#450)

* * Exposed seed in mock iq backend.
* Changed default bounds and initial p0 guess in drag analysis.

* * Fix tests.

* * Improve doc and black.

* Amp cal refactor (qiskit-community#439)

* * Added specializations.
* Moved fine amp to characterization.
* Refactored some tests.

* * Added tests.
* Added transpile options.

* * Removed obsolete test.
* Black

* * Docs and lint.

* * Docs and tests.

* * Begining of NB reworking.

* * Updated the tutorial.

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/calibration/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* * Documentation.

* * Documentation.

* * Added metadata hook in base class.
* Added metadata in fine amp cal circuits.

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Fix DB display for non-float values (qiskit-community#301)

* Fix DB display for non-finite floats

* Add safe JSON serialization of inf and NaN

* Fix some issues with safe float and recusion

* A few more fixes

* Add string conversion for result display

Add ability to display complex, list, and array results in result DB by converting to string. Currently this limits display to cases where the resulting string is < 60 characters.

* Add tests for display conversion

* Fix array2string conversion

* Remove special handling for non float values

Now only complex numbers are converted to strings, and any string values are uploaded to the database without checking their length (the service should do its own checking and truncation if required). For values that are not a float or string type, they are uploaded as a string of the class name "(cls)".

* Fixup tests for renamed method

* Remove unused import

* Include safe nan handling for chisq

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>

* remove double test (qiskit-community#454)

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>

* Update computation of probability (qiskit-community#424)

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>
Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>

* Documentation patch for PR424 (qiskit-community#458)

* Cleaned up composite_analysis.py (qiskit-community#443)

* Hack for non-existing parent id (qiskit-community#461)

* Remove ``experiment_data`` from ``BaseExperiment.run`` (qiskit-community#463)

* Remove experiment_data for BaseExperiment.run to prevent adding additional job data to existing experiment using this method. Now all executions must return unique ExperimentData objects, which can still manually be combined using `add_data` if the user wants.

* Add backend property to experiments (qiskit-community#462)

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* Add ExperimentConfig dataclass (qiskit-community#469)

* Half angle (qiskit-community#418)

* * First draft of half angle calibration.

* * inits and docstring.

* * Added transpile options, reference and more doc.

* * First draft of half angle.

* * Docs and test

* * removed transpile options (for a future PR).
* extended test.
* added analysis class.

* * fix docs.

* * Docstring

* Update qiskit_experiments/library/characterization/half_angle.py

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* * Added transpiler options for inst_map
* Bumped terra to main

* * ParameterRepr

* * Calibration class
* Black
* Tests

* * Improved doc.
* Implemented update rule.

* * Fixed update rule.

* * Update for half angle cal.

* * Bug fixes.
* Tutorial clean-up.

* * Black

* * Test align to bug fix.

* * Lint.

* * Added comment on options.

* Update qiskit_experiments/library/characterization/half_angle.py

* Update qiskit_experiments/library/characterization/half_angle.py

* Update qiskit_experiments/library/calibration/half_angle_cal.py

* * Changed init arg order.

* * refactor update rule.

* * Black

* Update qiskit_experiments/library/calibration/analysis/fine_half_angle_analysis.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/calibration/half_angle_cal.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/half_angle.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/half_angle.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update docs/tutorials/fine_calibrations.ipynb

Co-authored-by: Will Shanks <wshaos@posteo.net>

* * Doc.

* * Decorators, and decorators.

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>
Co-authored-by: Will Shanks <wshaos@posteo.net>

* Rabi refactor (qiskit-community#466)

* * Moved Rabi to characterization.

* * Refactor EFRabi and tests accordingly.
* Added tests for rough amp calibration.
* Reworked init files and docs in them.
* Added rough amplitude cal.
* Moved mock rabi backend.
* Removed amplitude update from updates.

* * Black and lint.

* * Docs

* * Docs.

* * Updated NB and caught some bugs.

* * Lint and removed updater amplitude test as Amplitude no longer exists.

* * Black

* * Test lint

* * Black.

* * Removed dt info

* * rabi_rate_12

* * Named tuple.

* * Bug fix with options.

* * Test fix after merge main.

* * setting of transpile options and the config test.

* Update qiskit_experiments/library/characterization/rabi.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update docs/tutorials/calibrating_armonk.ipynb

Co-authored-by: Will Shanks <wshaos@posteo.net>

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Add ``replace_results`` kwarg to ``BaseAnalysis.run`` (qiskit-community#464)

* This fixes issue with re-analyzing experiment data when trying to save to the result database. Now if replace_results is True any previous analysis results will be cleared and replaced with the new results, while if False a copy (with a new experiment id) will be generated containing only the new results.
* This change also requires a change that `BaseAnalysis.run` runs as an analysis callback, rather than just `BaseExperiment.run`.

* Fix typos in t1/t2 experiments (qiskit-community#480)

* T1 T2 analysis migration (qiskit-community#427)

* analysis class migration

* fix t1 test

* black

* fix conversion factor handling

* update tutorials

* bug fix

* documentation fix

* move some evaluation criteria from common analysis

* remove conversion factor and unit from result metadata

* keep conversion factor

* remove osc_freq from initial guess

* update conversion factor logic for init guess

* lint

* typo fix

* Added 0/1 cals for fine sx amp (qiskit-community#483)

* * Added 0/1 cals for fine sx amp.
* Added dedicated class for fine X amp analysis.

* * Aligned cal and characterization value.
* Fixed tests.
* Updated NB.

* * Fix method redefine.

* * Dropped negative bound on amp.

* Fix output array shape of SVD data processing node (qiskit-community#476)

* fix SVD shape

* fix docs

* fix comment

* fix var name

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* comments

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Edge-case: fitting constant y values with decay analysis (qiskit-community#487)

* Small fixes from recent PRs (qiskit-community#489)

Fixes a couple bugs from recent PRs
* set_backend has to be called last during initialization so that all instance attributes are created first in case they are used by _set_backend
* block_for_results in CompositeExperimentData was not returning self like the super class does
* BaseExperiment.run and BaseExperiment.run_analysis should return the output of Analysis.run / run_analysis in case a copy of the experiment data is created by the `replace_results` analysis kwarg.

* Drag cal refactor (qiskit-community#473)

* * Moved calibration.DragCal -> characterization.RoughDrag.
* New cal class RoughDragCal.
* Added test and refactored tests.
* Adjusted inits.

* * Default options.

* * Black.
* Amp. update fix.

* * Removed Drag update library test as this is now redundent with RoughDragCal test.

* * Removed Drag updater.

* * Removed unused import.

* * updated NB.

* * Aligned tests to the gate naming.

* * Tutorial NB.

* * Config test.

* * Args order and set options.

* Ramsey refactor. (qiskit-community#485)

* * Moved RamseyXY to characterization.
* Added a cal version of the class.

* * refactored RamseyXY.

* * Test config.

* Update qiskit_experiments/calibration_management/base_calibration_experiment.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* * Arg order in init.

* * Removed updated and fixed tests.

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Fix some typos in warnings (qiskit-community#493)

* Fix some typos in warnings

* Update qiskit_experiments/database_service/db_experiment_data.py

* Update qiskit_experiments/database_service/db_experiment_data.py

* Add child data support to ExperimentData (qiskit-community#451)

* BaseExperiment to accept only a list of qubits (qiskit-community#431)

Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>

* Replace `str(uuid4())` with `uuid4().hex` (qiskit-community#492)

* Revert "Replace `str(uuid4())` with `uuid4().hex` (qiskit-community#492)" (qiskit-community#501)

This reverts commit f5da13c.

* Fine drag cal refactor (qiskit-community#519)

* * First draft of framework to save and rebuild calibrations from metadata.

* * Moved FineDrag to characterization and created a calibration version of the experiment.

* * Undo git merging issues.

* * Fix merge issues.

* * Lint

* * Docs.

* * Lint.

* * Docs

* * Docs.

* Fix storing of component metadata in composite experiment (qiskit-community#510)

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* Consolidate the analysis classes in characterization. (qiskit-community#523)

* * Consolidated the analysis classes in characterization.

* * Black.

* Update qiskit_experiments/library/characterization/cr_hamiltonian.py

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* * Removed ~

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* Add ``Settings`` mixin class (qiskit-community#520)

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* Refactor where the calibration metadata is stored. (qiskit-community#524)

* * refactor of where the calibration metadata is stored.

* * Lint.

* Improve JSON encoder and decoder (qiskit-community#470)

* Move error about less than three points from T1 to DecayAnalysis (qiskit-community#490)

* Move error about less than three points from T1 to DecayAnalysis

* removed check also from decay

* lint

* Save-load test and bug fixes (qiskit-community#467)

* Test counts in composite experiments (qiskit-community#506)

* Bug fix: T1 and T2Ramsey don't run correctly on devices (qiskit-community#529)

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* Recursive methods for adding and removing tags (qiskit-community#522)

* wrote add_tags_recursive and remove_tag_recursive

* docs

* lint

* Update qiskit_experiments/database_service/db_experiment_data.py

Co-authored-by: Helena Zhang <Helena.Zhang@ibm.com>

* release notes

* fix method docs

* fixed test

* black

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* Readout angle experiment (qiskit-community#525)

* Readout angle experiment

* readout angle files

* removed fix_class_docs

* bug fix in composite save

* removed debug prints

* moved location of analysis file

* removed the parallel test

* black

* lint

* black

* lint

* black

* update init file

* docs

* release notes

* addressing review comments

* Update ``ExperimentData.analysis_results`` to be blocking by default (qiskit-community#486)

* Serialize the basis gate library (qiskit-community#539)

* * Serialization support for the BasisGateLibrary.

* Update qiskit_experiments/calibration_management/basis_gate_library.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* * Internal clean-up of basis gate library.

* * Warning message.

* * Hashing of basis gate library.

* * dict(...) -> .copy()

* * Added a test for raising a user warning on different hash values.

* * Test docs.

* * Refactored schedule building.

* * Made test robust.

* * Test fix and cleaner implementation.

* * removed use_drag.

* * Test fix.

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Data processor with uncertainties package (qiskit-community#481)

* fix SVD shape

* fix docs

* fix comment

* fix var name

* Update qiskit_experiments/data_processing/nodes.py

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* Update qiskit_experiments/data_processing/nodes.py

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* Update qiskit_experiments/data_processing/nodes.py

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* comments

* update except for SVD

* update note tests

* fix processor logic

* documentation

* lint

* add reno

use np.testing

* fix test

* Update qiskit_experiments/data_processing/data_action.py

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* Update qiskit_experiments/data_processing/data_action.py

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* Update qiskit_experiments/data_processing/data_action.py

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* Update qiskit_experiments/data_processing/data_action.py

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* Update qiskit_experiments/data_processing/data_processor.py

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* Update qiskit_experiments/data_processing/data_processor.py

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* Update qiskit_experiments/data_processing/data_processor.py

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* Update qiskit_experiments/data_processing/data_processor.py

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* Update qiskit_experiments/data_processing/data_processor.py

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* Update qiskit_experiments/data_processing/nodes.py

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* add description for correlation

* remove typehint for trainable node

* update return doc

* add type check

* detail for full array

* Update qiskit_experiments/data_processing/nodes.py

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* Update qiskit_experiments/data_processing/nodes.py

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* add comment

* fix document

* black

* Update qiskit_experiments/data_processing/__init__.py

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* Update qiskit_experiments/data_processing/data_processor.py

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* Update qiskit_experiments/data_processing/data_processor.py

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* update docs

* update docs

* restrict count validation

* update return type of data processor

* lint

* add svd test

* update average node

* Update qiskit_experiments/data_processing/data_processor.py

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* Update qiskit_experiments/data_processing/nodes.py

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* Update qiskit_experiments/data_processing/nodes.py

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* Update qiskit_experiments/data_processing/nodes.py

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* Update qiskit_experiments/data_processing/nodes.py

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* Update qiskit_experiments/data_processing/nodes.py

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* add comment

* add handling for level2 memory

* black

* lint

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* ignore assigning-non-slot (qiskit-community#553)

* Clean-up of Base calibration experiments (qiskit-community#547)

* * Removed unused methods and added some validation.

* * Moved validation to after init.

* * Moved validation to before super().__init__
* Removed validate schedules.

* * Fix validation.

* Change config from property to method (qiskit-community#555)

* Add StoreInitArgs mixin (qiskit-community#554)

* Start of BaseAnalysis refactor (qiskit-community#517)

* Analysis refactor part 2 (qiskit-community#556)

* small fixes

* Change to deprecated analysis class usage

* Analysis returns mitigator object instead of matrices

* Refactoring mitigation experiment

* Refactoring mitigation analysis

* Linting

* Linting

* Linting

* Linting

* Mitigation tutorial notebook

* Mitigation tutorial notebook update

* Mitigation experiment tests

* Linting

* Changes to visualization

* Bugfix

* Linting

* Avoiding failing test due to small bug in Terra

* Linting

* Linting

* Refactoring

* Tutorial texts

* Plot fix

* Release note

Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>
Co-authored-by: Matthew Treinish <mtreinish@kortar.org>
Co-authored-by: Daniel Egger <38065505+eggerdj@users.noreply.github.com>
Co-authored-by: Will Shanks <wshaos@posteo.net>
Co-authored-by: Naoki Kanazawa <knzwnao@jp.ibm.com>
Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>
Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>
Co-authored-by: Kevin Tian <kevin.tian@ibm.com>
Co-authored-by: dekelmeirom <33314493+dekelmeirom@users.noreply.github.com>
Co-authored-by: Will Shanks <willshanks@us.ibm.com>
Co-authored-by: Helena Zhang <Helena.Zhang@ibm.com>
paco-ri pushed a commit to paco-ri/qiskit-experiments that referenced this pull request Jul 11, 2022
* Mitigation experiment initial commit

* Added mitigation analysis

* Small fixes to ensure figures are generated

* Linting

* Adding tensored mitigation as parallel experiment

* Changing method into class

* Bug fixes

* Restructuring to avoid reliance on composite experiment, and simplifying tensored experiment

* Refactor mitigation experiment to have two experiment classes

* RB Interleaved element fix (qiskit-community#399)

* Slightly changing the way interleaved element is passed and used

* Linting

* Linting

* Linting

* Allow splitting of jobs for all backends (qiskit-community#402)

* Allow splitting of jobs for all backends

Allows splitting experiments containing more circuits than can be executed at once into multiple jobs for legacy backends and 3rd party backends that don't support job splitting automatically.

* Update requirements.txt mpl req

* Add test

Also had to fix bug in FakeJob where the job id of the result and job didn't match which would lead to errors in the number of added jobs.

* Fixup

* Fix missing callback

Fix missing callback call when all added data is non-job data

* Add lock to add_data

* Fix type hint for run_analysis

* Update releasenotes/notes/job-splitting-775dc9aed9cf20c2.yaml

Co-authored-by: Matthew Treinish <mtreinish@kortar.org>

Co-authored-by: Matthew Treinish <mtreinish@kortar.org>

* FineAmp without schedules (qiskit-community#420)

* * FineAmp can now run without a schedule.

* * Added test on gates.

* * Made fine drag work without schedules.

* Update qiskit_experiments/library/calibration/fine_drag.py

* * Docstring

* Update qiskit_experiments/library/calibration/fine_drag.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/calibration/fine_drag.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Fix bug in curve_fit for sigma=None (qiskit-community#422)

Setting `sigma=None` for curve_fit would raise an error from trying to call `np.isnan(None)`. This adds a check that sigma is not None first.

* Fix bug in DbExperimentData._retrieve_data (qiskit-community#421)

* Add analysis callback to ExperimentData (qiskit-community#407)

* Add default pre-processing to curve analysis (qiskit-community#409)

* add pre-processing to curve fit

* black&lint

* add reno

* rb notebook update

* update averaging method with shot number

* revert RB analysis

* update reno

* fix test

* revert rb notebook

* fix documentation from comments

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>

* add shots to data sort

* fix bug

* black

* fix bug

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>

* Improve calibration experiments (qiskit-community#251)

Co-authored-by: Will Shanks <wshaos@posteo.net>
Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>
Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>

* english (qiskit-community#429)

* PR for saving and loading composite experiments (qiskit-community#364)

Co-authored-by: Kevin Tian <kevin.tian@ibm.com>
Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>

* Bump terra to the most recent master (qiskit-community#426)

* * Terra bump

* * Constraints.

* * Delete constraints.

* Make verify_headers verify files in the test folder (qiskit-community#433)

* Make verify_headers verify files in the test folder

* made verify_headers nicer

* lint

* update tox.ini to run black and lint also for the tools folder

* Fix bug with ExperimentData.load (qiskit-community#423)

* * Fix issue 430 (qiskit-community#434)

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>

* * Added loading bug fix and corresponding test. (qiskit-community#444)

* * Added tearDown. (qiskit-community#449)

* Adjust tomography doc strings to automatic template (qiskit-community#375)

* tomography autotemplate doc

* fix lint errors

* fix indentation

* add blank lines

* small doc change

* Update qpt_analysis.py

* Update qpt_experiment.py

* Update qst_analysis.py

* lint docs fix

* misc

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>
Co-authored-by: knzwnao <knzwnao@jp.ibm.com>

* Drag fit instability (qiskit-community#450)

* * Exposed seed in mock iq backend.
* Changed default bounds and initial p0 guess in drag analysis.

* * Fix tests.

* * Improve doc and black.

* Amp cal refactor (qiskit-community#439)

* * Added specializations.
* Moved fine amp to characterization.
* Refactored some tests.

* * Added tests.
* Added transpile options.

* * Removed obsolete test.
* Black

* * Docs and lint.

* * Docs and tests.

* * Begining of NB reworking.

* * Updated the tutorial.

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

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* Update qiskit_experiments/library/calibration/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/fine_amplitude.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* * Documentation.

* * Documentation.

* * Added metadata hook in base class.
* Added metadata in fine amp cal circuits.

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Fix DB display for non-float values (qiskit-community#301)

* Fix DB display for non-finite floats

* Add safe JSON serialization of inf and NaN

* Fix some issues with safe float and recusion

* A few more fixes

* Add string conversion for result display

Add ability to display complex, list, and array results in result DB by converting to string. Currently this limits display to cases where the resulting string is < 60 characters.

* Add tests for display conversion

* Fix array2string conversion

* Remove special handling for non float values

Now only complex numbers are converted to strings, and any string values are uploaded to the database without checking their length (the service should do its own checking and truncation if required). For values that are not a float or string type, they are uploaded as a string of the class name "(cls)".

* Fixup tests for renamed method

* Remove unused import

* Include safe nan handling for chisq

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>

* remove double test (qiskit-community#454)

Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>

* Update computation of probability (qiskit-community#424)

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>
Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>

* Documentation patch for PR424 (qiskit-community#458)

* Cleaned up composite_analysis.py (qiskit-community#443)

* Hack for non-existing parent id (qiskit-community#461)

* Remove ``experiment_data`` from ``BaseExperiment.run`` (qiskit-community#463)

* Remove experiment_data for BaseExperiment.run to prevent adding additional job data to existing experiment using this method. Now all executions must return unique ExperimentData objects, which can still manually be combined using `add_data` if the user wants.

* Add backend property to experiments (qiskit-community#462)

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* Add ExperimentConfig dataclass (qiskit-community#469)

* Half angle (qiskit-community#418)

* * First draft of half angle calibration.

* * inits and docstring.

* * Added transpile options, reference and more doc.

* * First draft of half angle.

* * Docs and test

* * removed transpile options (for a future PR).
* extended test.
* added analysis class.

* * fix docs.

* * Docstring

* Update qiskit_experiments/library/characterization/half_angle.py

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* * Added transpiler options for inst_map
* Bumped terra to main

* * ParameterRepr

* * Calibration class
* Black
* Tests

* * Improved doc.
* Implemented update rule.

* * Fixed update rule.

* * Update for half angle cal.

* * Bug fixes.
* Tutorial clean-up.

* * Black

* * Test align to bug fix.

* * Lint.

* * Added comment on options.

* Update qiskit_experiments/library/characterization/half_angle.py

* Update qiskit_experiments/library/characterization/half_angle.py

* Update qiskit_experiments/library/calibration/half_angle_cal.py

* * Changed init arg order.

* * refactor update rule.

* * Black

* Update qiskit_experiments/library/calibration/analysis/fine_half_angle_analysis.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/calibration/half_angle_cal.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/half_angle.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update qiskit_experiments/library/characterization/half_angle.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update docs/tutorials/fine_calibrations.ipynb

Co-authored-by: Will Shanks <wshaos@posteo.net>

* * Doc.

* * Decorators, and decorators.

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>
Co-authored-by: Will Shanks <wshaos@posteo.net>

* Rabi refactor (qiskit-community#466)

* * Moved Rabi to characterization.

* * Refactor EFRabi and tests accordingly.
* Added tests for rough amp calibration.
* Reworked init files and docs in them.
* Added rough amplitude cal.
* Moved mock rabi backend.
* Removed amplitude update from updates.

* * Black and lint.

* * Docs

* * Docs.

* * Updated NB and caught some bugs.

* * Lint and removed updater amplitude test as Amplitude no longer exists.

* * Black

* * Test lint

* * Black.

* * Removed dt info

* * rabi_rate_12

* * Named tuple.

* * Bug fix with options.

* * Test fix after merge main.

* * setting of transpile options and the config test.

* Update qiskit_experiments/library/characterization/rabi.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Update docs/tutorials/calibrating_armonk.ipynb

Co-authored-by: Will Shanks <wshaos@posteo.net>

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Add ``replace_results`` kwarg to ``BaseAnalysis.run`` (qiskit-community#464)

* This fixes issue with re-analyzing experiment data when trying to save to the result database. Now if replace_results is True any previous analysis results will be cleared and replaced with the new results, while if False a copy (with a new experiment id) will be generated containing only the new results.
* This change also requires a change that `BaseAnalysis.run` runs as an analysis callback, rather than just `BaseExperiment.run`.

* Fix typos in t1/t2 experiments (qiskit-community#480)

* T1 T2 analysis migration (qiskit-community#427)

* analysis class migration

* fix t1 test

* black

* fix conversion factor handling

* update tutorials

* bug fix

* documentation fix

* move some evaluation criteria from common analysis

* remove conversion factor and unit from result metadata

* keep conversion factor

* remove osc_freq from initial guess

* update conversion factor logic for init guess

* lint

* typo fix

* Added 0/1 cals for fine sx amp (qiskit-community#483)

* * Added 0/1 cals for fine sx amp.
* Added dedicated class for fine X amp analysis.

* * Aligned cal and characterization value.
* Fixed tests.
* Updated NB.

* * Fix method redefine.

* * Dropped negative bound on amp.

* Fix output array shape of SVD data processing node (qiskit-community#476)

* fix SVD shape

* fix docs

* fix comment

* fix var name

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* comments

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Edge-case: fitting constant y values with decay analysis (qiskit-community#487)

* Small fixes from recent PRs (qiskit-community#489)

Fixes a couple bugs from recent PRs
* set_backend has to be called last during initialization so that all instance attributes are created first in case they are used by _set_backend
* block_for_results in CompositeExperimentData was not returning self like the super class does
* BaseExperiment.run and BaseExperiment.run_analysis should return the output of Analysis.run / run_analysis in case a copy of the experiment data is created by the `replace_results` analysis kwarg.

* Drag cal refactor (qiskit-community#473)

* * Moved calibration.DragCal -> characterization.RoughDrag.
* New cal class RoughDragCal.
* Added test and refactored tests.
* Adjusted inits.

* * Default options.

* * Black.
* Amp. update fix.

* * Removed Drag update library test as this is now redundent with RoughDragCal test.

* * Removed Drag updater.

* * Removed unused import.

* * updated NB.

* * Aligned tests to the gate naming.

* * Tutorial NB.

* * Config test.

* * Args order and set options.

* Ramsey refactor. (qiskit-community#485)

* * Moved RamseyXY to characterization.
* Added a cal version of the class.

* * refactored RamseyXY.

* * Test config.

* Update qiskit_experiments/calibration_management/base_calibration_experiment.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* * Arg order in init.

* * Removed updated and fixed tests.

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Fix some typos in warnings (qiskit-community#493)

* Fix some typos in warnings

* Update qiskit_experiments/database_service/db_experiment_data.py

* Update qiskit_experiments/database_service/db_experiment_data.py

* Add child data support to ExperimentData (qiskit-community#451)

* BaseExperiment to accept only a list of qubits (qiskit-community#431)

Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>

* Replace `str(uuid4())` with `uuid4().hex` (qiskit-community#492)

* Revert "Replace `str(uuid4())` with `uuid4().hex` (qiskit-community#492)" (qiskit-community#501)

This reverts commit f5da13c.

* Fine drag cal refactor (qiskit-community#519)

* * First draft of framework to save and rebuild calibrations from metadata.

* * Moved FineDrag to characterization and created a calibration version of the experiment.

* * Undo git merging issues.

* * Fix merge issues.

* * Lint

* * Docs.

* * Lint.

* * Docs

* * Docs.

* Fix storing of component metadata in composite experiment (qiskit-community#510)

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* Consolidate the analysis classes in characterization. (qiskit-community#523)

* * Consolidated the analysis classes in characterization.

* * Black.

* Update qiskit_experiments/library/characterization/cr_hamiltonian.py

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* * Removed ~

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* Add ``Settings`` mixin class (qiskit-community#520)

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* Refactor where the calibration metadata is stored. (qiskit-community#524)

* * refactor of where the calibration metadata is stored.

* * Lint.

* Improve JSON encoder and decoder (qiskit-community#470)

* Move error about less than three points from T1 to DecayAnalysis (qiskit-community#490)

* Move error about less than three points from T1 to DecayAnalysis

* removed check also from decay

* lint

* Save-load test and bug fixes (qiskit-community#467)

* Test counts in composite experiments (qiskit-community#506)

* Bug fix: T1 and T2Ramsey don't run correctly on devices (qiskit-community#529)

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>

* Recursive methods for adding and removing tags (qiskit-community#522)

* wrote add_tags_recursive and remove_tag_recursive

* docs

* lint

* Update qiskit_experiments/database_service/db_experiment_data.py

Co-authored-by: Helena Zhang <Helena.Zhang@ibm.com>

* release notes

* fix method docs

* fixed test

* black

Co-authored-by: Helena Zhang <Helena.Zhang@ibm.com>

* Readout angle experiment (qiskit-community#525)

* Readout angle experiment

* readout angle files

* removed fix_class_docs

* bug fix in composite save

* removed debug prints

* moved location of analysis file

* removed the parallel test

* black

* lint

* black

* lint

* black

* update init file

* docs

* release notes

* addressing review comments

* Update ``ExperimentData.analysis_results`` to be blocking by default (qiskit-community#486)

* Serialize the basis gate library (qiskit-community#539)

* * Serialization support for the BasisGateLibrary.

* Update qiskit_experiments/calibration_management/basis_gate_library.py

Co-authored-by: Will Shanks <wshaos@posteo.net>

* * Internal clean-up of basis gate library.

* * Warning message.

* * Hashing of basis gate library.

* * dict(...) -> .copy()

* * Added a test for raising a user warning on different hash values.

* * Test docs.

* * Refactored schedule building.

* * Made test robust.

* * Test fix and cleaner implementation.

* * removed use_drag.

* * Test fix.

Co-authored-by: Will Shanks <wshaos@posteo.net>

* Data processor with uncertainties package (qiskit-community#481)

* fix SVD shape

* fix docs

* fix comment

* fix var name

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* comments

* update except for SVD

* update note tests

* fix processor logic

* documentation

* lint

* add reno

use np.testing

* fix test

* Update qiskit_experiments/data_processing/data_action.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/data_action.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/data_action.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/data_action.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/data_processor.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/data_processor.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/data_processor.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/data_processor.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/data_processor.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* add description for correlation

* remove typehint for trainable node

* update return doc

* add type check

* detail for full array

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* add comment

* fix document

* black

* Update qiskit_experiments/data_processing/__init__.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/data_processor.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/data_processor.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* update docs

* update docs

* restrict count validation

* update return type of data processor

* lint

* add svd test

* update average node

* Update qiskit_experiments/data_processing/data_processor.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* Update qiskit_experiments/data_processing/nodes.py

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* add comment

* add handling for level2 memory

* black

* lint

Co-authored-by: Daniel J. Egger <38065505+eggerdj@users.noreply.github.com>

* ignore assigning-non-slot (qiskit-community#553)

* Clean-up of Base calibration experiments (qiskit-community#547)

* * Removed unused methods and added some validation.

* * Moved validation to after init.

* * Moved validation to before super().__init__
* Removed validate schedules.

* * Fix validation.

* Change config from property to method (qiskit-community#555)

* Add StoreInitArgs mixin (qiskit-community#554)

* Start of BaseAnalysis refactor (qiskit-community#517)

* Analysis refactor part 2 (qiskit-community#556)

* small fixes

* Change to deprecated analysis class usage

* Analysis returns mitigator object instead of matrices

* Refactoring mitigation experiment

* Refactoring mitigation analysis

* Linting

* Linting

* Linting

* Linting

* Mitigation tutorial notebook

* Mitigation tutorial notebook update

* Mitigation experiment tests

* Linting

* Changes to visualization

* Bugfix

* Linting

* Avoiding failing test due to small bug in Terra

* Linting

* Linting

* Refactoring

* Tutorial texts

* Plot fix

* Release note

Co-authored-by: Christopher J. Wood <cjwood@us.ibm.com>
Co-authored-by: Matthew Treinish <mtreinish@kortar.org>
Co-authored-by: Daniel Egger <38065505+eggerdj@users.noreply.github.com>
Co-authored-by: Will Shanks <wshaos@posteo.net>
Co-authored-by: Naoki Kanazawa <knzwnao@jp.ibm.com>
Co-authored-by: Yael Ben-Haim <yaelbh@il.ibm.com>
Co-authored-by: Naoki Kanazawa <nkanazawa1989@gmail.com>
Co-authored-by: Kevin Tian <kevin.tian@ibm.com>
Co-authored-by: dekelmeirom <33314493+dekelmeirom@users.noreply.github.com>
Co-authored-by: Will Shanks <willshanks@us.ibm.com>
Co-authored-by: Helena Zhang <Helena.Zhang@ibm.com>
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Readout mitigation experiments

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