Bump to 0.19.0

examples/annotation.py

@@ -320,7 +320,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Bayesian Models of Annotation")
     parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int)
     parser.add_argument("--num-warmup", nargs="?", default=1000, type=int)

examples/ar2.py

@@ -138,7 +138,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="AR2 example")
     parser.add_argument("--num-data", nargs="?", default=142, type=int)
     parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int)

examples/baseball.py

@@ -210,7 +210,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Baseball batting average using MCMC")
     parser.add_argument("-n", "--num-samples", nargs="?", default=3000, type=int)
     parser.add_argument("--num-warmup", nargs="?", default=1500, type=int)

examples/bnn.py

@@ -160,7 +160,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Bayesian neural network example")
     parser.add_argument("-n", "--num-samples", nargs="?", default=2000, type=int)
     parser.add_argument("--num-warmup", nargs="?", default=1000, type=int)

examples/capture_recapture.py

@@ -348,7 +348,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(
         description="CJS capture-recapture model for ecological data"
     )

examples/covtype.py

@@ -206,7 +206,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument(
         "-n", "--num-samples", default=1000, type=int, help="number of samples"

examples/cvae-flax/main.py

@@ -79,7 +79,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(
         description="Conditional Variational Autoencoder on MNIST using Flax"
     )

examples/dais_demo.py

@@ -160,7 +160,7 @@ def add_fig(samples, title, ax):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser("Usage example for AutoDAIS guide.")
     parser.add_argument("--num-svi-steps", type=int, default=80 * 1000)
     parser.add_argument("--num-warmup", type=int, default=2000)

examples/funnel.py

@@ -139,7 +139,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(
         description="Non-centered reparameterization example"
     )

examples/gaussian_shells.py

@@ -120,7 +120,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
 
     parser = argparse.ArgumentParser(description="Nested sampler for Gaussian shells")
     parser.add_argument("-n", "--num-samples", nargs="?", default=10000, type=int)

examples/gp.py

@@ -180,7 +180,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Gaussian Process example")
     parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int)
     parser.add_argument("--num-warmup", nargs="?", default=1000, type=int)

examples/hmcecs.py

@@ -139,7 +139,7 @@ def summary_plot(losses, hmc_samples, hmcecs_samples, hmc_runtime, hmcecs_runtim
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(
         "Hamiltonian Monte Carlo with Energy Conserving Subsampling"
     )

examples/hmm.py

@@ -263,7 +263,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Semi-supervised Hidden Markov Model")
     parser.add_argument("--num-categories", default=3, type=int)
     parser.add_argument("--num-words", default=10, type=int)

examples/hmm_enum.py

@@ -370,7 +370,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="HMC for HMMs")
     parser.add_argument(
         "-m",

examples/holt_winters.py

@@ -180,7 +180,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Holt-Winters")
     parser.add_argument("--T", nargs="?", default=6, type=int)
     parser.add_argument("--future", nargs="?", default=1, type=int)

examples/horseshoe_regression.py

@@ -162,7 +162,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Horseshoe regression example")
     parser.add_argument("-n", "--num-samples", nargs="?", default=2000, type=int)
     parser.add_argument("--num-warmup", nargs="?", default=1000, type=int)

examples/hsgp.py

@@ -568,7 +568,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     args = parse_arguments()
     numpyro.enable_x64(args.x64)
     numpyro.set_platform(args.device)

examples/minipyro.py

@@ -58,7 +58,7 @@ def body_fn(i, val):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Mini Pyro demo")
     parser.add_argument("-f", "--full-pyro", action="store_true", default=False)
     parser.add_argument("-n", "--num-steps", default=1001, type=int)

examples/mortality.py

@@ -220,7 +220,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
 
     parser = argparse.ArgumentParser(description="Mortality regression model")
     parser.add_argument("-n", "--num-samples", nargs="?", default=500, type=int)

examples/neutra.py

@@ -197,7 +197,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="NeuTra HMC")
     parser.add_argument("-n", "--num-samples", nargs="?", default=4000, type=int)
     parser.add_argument("--num-warmup", nargs="?", default=1000, type=int)

examples/ode.py

@@ -117,7 +117,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Predator-Prey Model")
     parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int)
     parser.add_argument("--num-warmup", nargs="?", default=1000, type=int)

examples/prodlda.py

@@ -315,7 +315,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(
         description="Probabilistic topic modelling with Flax and Haiku"
     )

examples/proportion_test.py

@@ -158,7 +158,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Testing whether  ")
     parser.add_argument("-n", "--num-samples", nargs="?", default=500, type=int)
     parser.add_argument("--num-warmup", nargs="?", default=1500, type=int)

examples/sparse_regression.py

@@ -384,7 +384,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Gaussian Process example")
     parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int)
     parser.add_argument("--num-warmup", nargs="?", default=500, type=int)

examples/ssbvm_mixture.py

@@ -283,7 +283,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(
         description="Sine-skewed sine (bivariate von mises) mixture model example"
     )

examples/stein_bnn.py

@@ -187,7 +187,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     config.update("jax_debug_nans", True)
 
     parser = argparse.ArgumentParser()

examples/stochastic_volatility.py

@@ -122,7 +122,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Stochastic Volatility Model")
     parser.add_argument("-n", "--num-samples", nargs="?", default=600, type=int)
     parser.add_argument("--num-warmup", nargs="?", default=600, type=int)

examples/thompson_sampling.py

@@ -292,7 +292,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Thompson sampling example")
     parser.add_argument(
         "--num-random", nargs="?", default=2, type=int, help="number of random draws"

examples/toy_mixture_model_discrete_enumeration.py

@@ -126,7 +126,7 @@ def get_true_pred_CPDs(CPD, posterior_param):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="Toy mixture model")
     parser.add_argument("-n", "--num-steps", default=4000, type=int)
     parser.add_argument("-o", "--num-obs", default=10000, type=int)

examples/ucbadmit.py

@@ -151,7 +151,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(
         description="UCBadmit gender discrimination using HMC"
     )

examples/vae.py

@@ -160,7 +160,7 @@ def reconstruct_img(epoch, rng_key):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument(
         "-n", "--num-epochs", default=15, type=int, help="number of training epochs"

examples/var2.py

@@ -202,7 +202,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser(description="VAR(2) example")
     parser.add_argument("--num-data", nargs="?", default=100, type=int)
     parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int)

examples/zero_inflated_poisson.py

@@ -154,7 +154,7 @@ def add_fig(var_name, title, ax):
 
 
 if __name__ == "__main__":
-    assert numpyro.__version__.startswith("0.18.0")
+    assert numpyro.__version__.startswith("0.19.0")
     parser = argparse.ArgumentParser("Zero-Inflated Poisson Regression")
     parser.add_argument("--seed", nargs="?", default=42, type=int)
     parser.add_argument("-n", "--num-samples", nargs="?", default=2000, type=int)

notebooks/source/bad_posterior_geometry.ipynb

@@ -49,7 +49,7 @@
     "import numpyro.distributions as dist\n",
     "from numpyro.infer import MCMC, NUTS\n",
     "\n",
-    "assert numpyro.__version__.startswith(\"0.18.0\")\n",
+    "assert numpyro.__version__.startswith(\"0.19.0\")\n",
     "\n",
     "# NB: replace cpu by gpu to run this notebook on gpu\n",
     "numpyro.set_platform(\"cpu\")"

notebooks/source/bayesian_cuped.ipynb

@@ -55,7 +55,7 @@
     "plt.rcParams[\"figure.dpi\"] = 100\n",
     "plt.rcParams[\"figure.facecolor\"] = \"white\"\n",
     "\n",
-    "assert numpyro.__version__.startswith(\"0.18.0\")\n",
+    "assert numpyro.__version__.startswith(\"0.19.0\")\n",
     "\n",
     "%load_ext autoreload\n",
     "%autoreload 2\n",

notebooks/source/bayesian_hierarchical_linear_regression.ipynb

@@ -246,7 +246,7 @@
     "import numpyro.distributions as dist\n",
     "from numpyro.infer import MCMC, NUTS, Predictive\n",
     "\n",
-    "assert numpyro.__version__.startswith(\"0.18.0\")"
+    "assert numpyro.__version__.startswith(\"0.19.0\")"
    ]
   },
   {

notebooks/source/bayesian_hierarchical_stacking.ipynb

@@ -97,7 +97,7 @@
     "    set_matplotlib_formats(\"svg\")\n",
     "\n",
     "numpyro.set_host_device_count(4)\n",
-    "assert numpyro.__version__.startswith(\"0.18.0\")"
+    "assert numpyro.__version__.startswith(\"0.19.0\")"
    ]
   },
   {

notebooks/source/bayesian_imputation.ipynb

@@ -52,7 +52,7 @@
     "if \"NUMPYRO_SPHINXBUILD\" in os.environ:\n",
     "    set_matplotlib_formats(\"svg\")\n",
     "\n",
-    "assert numpyro.__version__.startswith(\"0.18.0\")"
+    "assert numpyro.__version__.startswith(\"0.19.0\")"
    ]
   },
   {

notebooks/source/bayesian_regression.ipynb

@@ -91,7 +91,7 @@
     "if \"NUMPYRO_SPHINXBUILD\" in os.environ:\n",
     "    set_matplotlib_formats(\"svg\")\n",
     "\n",
-    "assert numpyro.__version__.startswith(\"0.18.0\")"
+    "assert numpyro.__version__.startswith(\"0.19.0\")"
    ]
   },
   {

notebooks/source/censoring.ipynb

@@ -60,7 +60,7 @@
     "\n",
     "rng_key = random.PRNGKey(seed=0)\n",
     "\n",
-    "assert numpyro.__version__.startswith(\"0.18.0\")\n",
+    "assert numpyro.__version__.startswith(\"0.19.0\")\n",
     "\n",
     "%load_ext autoreload\n",
     "%autoreload 2\n",

notebooks/source/gmm.ipynb

@@ -54,7 +54,7 @@
     "%matplotlib inline\n",
     "\n",
     "smoke_test = \"CI\" in os.environ\n",
-    "assert numpyro.__version__.startswith(\"0.18.0\")"
+    "assert numpyro.__version__.startswith(\"0.19.0\")"
    ]
   },
   {

notebooks/source/hierarchical_forecasting.ipynb

@@ -51,7 +51,7 @@
     "\n",
     "rng_key = random.PRNGKey(seed=42)\n",
     "\n",
-    "assert numpyro.__version__.startswith(\"0.18.0\")\n",
+    "assert numpyro.__version__.startswith(\"0.19.0\")\n",
     "\n",
     "%load_ext autoreload\n",
     "%autoreload 2\n",

notebooks/source/hsgp_example.ipynb

@@ -62,7 +62,7 @@
     "\n",
     "rng_key = random.PRNGKey(seed=42)\n",
     "\n",
-    "assert numpyro.__version__.startswith(\"0.18.0\")\n",
+    "assert numpyro.__version__.startswith(\"0.19.0\")\n",
     "\n",
     "%load_ext autoreload\n",
     "%autoreload 2\n",

notebooks/source/logistic_regression.ipynb

@@ -41,7 +41,7 @@
     "from numpyro.examples.datasets import COVTYPE, load_dataset\n",
     "from numpyro.infer import HMC, MCMC, NUTS\n",
     "\n",
-    "assert numpyro.__version__.startswith(\"0.18.0\")\n",
+    "assert numpyro.__version__.startswith(\"0.19.0\")\n",
     "\n",
     "# NB: replace gpu by cpu to run this notebook in cpu\n",
     "numpyro.set_platform(\"gpu\")"