v4 refactor for GP module#5055

Merged

twiecki merged 36 commits intopymc-devs:mainfrom

bwengals:gpv4update

Nov 21, 2021

Commits on Oct 28, 2021

np.int -> int, fix np DepricationWarning

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remove shape arg from non-kron implementations, TODO for is_observed in Marginal, mark for deprecation

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np.int -> int in gp/util.py

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force all mean_func, cov_func args to GP constructors to be required kwargs (often default zero mean_func is used)

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fix predictt functions, rename to _predict_at. because theano -> aesara

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fix TP tests, force mean_func, cov_func to be req kwarg

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fix TP reparameterization to sample studentt instead of chi2/norm

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change naming shape->size where appropriate

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add deprecation warning for is_observed
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add jitter arg for covs headed for cholesky decomps, previously fixed at 1e-6. add deprecation warning for is_observed arg
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clean up trivial aesara.function usage to .eval() instead
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fix gp.util.replace_with_values to handle case with no symbolic values, .eval() works
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jitter=0 for conditonals/predicts, fix replace_with_values calls
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fix more tests
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black stuff
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Merge branch 'main' into gpv4update
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small fixes to get kronlatent and kronmarginal to pass
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remove leftover prints
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Commits on Oct 30, 2021

dep warning -> future warning
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Commits on Nov 3, 2021

Commits on Nov 4, 2021

Commits on Nov 8, 2021

Commits on Nov 9, 2021

Commits on Nov 13, 2021

add link to PR
bwengals
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Commits on Nov 20, 2021

Commits on Nov 21, 2021

Update RELEASE-NOTES.md
twiecki
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